New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	958380 =	37 (0.750)	4 (0.090)	4/230	NT	11.4%	intergenic (+27/‑166)	ykgJ/PP_0820	ferredoxin/acetyltransferase
	?	NC_002947	958419 =	29 (0.650)					intergenic (+66/‑127)	ykgJ/PP_0820	ferredoxin/acetyltransferase

GGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCC  >  NC_002947/958271‑958567                                                                                                                                                     |                                                                                                                                                     ggggggCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAg                                                                                                                                                      <  8:198878/149‑1 (MQ=255)             gTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCaa                                                                                                                                           <  1:171594/148‑1 (MQ=255)             gTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCaa                                                                                                                                           <  2:182535/148‑1 (MQ=255)              tttGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAgg                                                                                                                                         <  5:165035/149‑1 (MQ=255)                    gccgcTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTg                                                                                                                                   <  5:258413/149‑1 (MQ=255)                            ccccGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTgtgg                                                                                                                           >  8:98272/1‑149 (MQ=255)                             cccGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTgtggt                                                                                                                          >  3:202882/1‑149 (MQ=255)                                       gCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCg                                                                                                                >  6:132393/1‑149 (MQ=255)                                            cGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCg                                                                                                                                                >  1:132625/1‑112 (MQ=255)                                            cGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCg                                                                                                                                                <  2:132625/112‑1 (MQ=255)                                                 cGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCt                                                                                                      <  6:33388/149‑1 (MQ=255)                                                  gCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTg                                                                                                     >  3:120928/1‑149 (MQ=255)                                                   cATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTgtggt                                                                                                                          >  1:188508/1‑127 (MQ=255)                                                   cATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTgtggt                                                                                                                          <  2:188508/127‑1 (MQ=255)                                                             atgatgGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGccc                                                                                          <  4:202882/149‑1 (MQ=255)                                                                atgGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCga                                                                                        <  4:120928/148‑1 (MQ=255)                                                                   tggCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGAt                                                                                     <  7:3701/147‑1 (MQ=255)                                                                         aGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGaa                                                                              <  7:206865/149‑1 (MQ=255)                                                                                 tGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCAc                                                                      >  3:157889/1‑149 (MQ=255)                                                                                   aaGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTg                                                                         >  2:296341/1‑144 (MQ=255)                                                                                   aaGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTg                                                                         <  1:296341/144‑1 (MQ=255)                                                                                   aaGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACtt                                                                    <  5:132393/149‑1 (MQ=255)                                                                                              aGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGCCGACGGGATGCAAAGCTGCCCGAGATGCATGAACCCTGAACTTGACGTTAAACt                                                         >  4:233337/1‑149 (MQ=255)                                                                                               gTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGAc                                                                 <  3:54573/140‑1 (MQ=255)                                                                                               gTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGAc                                                                 >  4:54573/1‑140 (MQ=255)                                                                                                      gTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCAtctc                                                 <  7:98272/149‑1 (MQ=255)                                                                                                         gTCAATGTGGAAGCGGCCTTTTGTGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTccc                                               >  7:62480/1‑148 (MQ=255)                                                                                                            aaTGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAg                                            >  6:287851/1‑148 (MQ=255)                                                                                                              TGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCaa                                         >  5:287851‑M1/1‑149 (MQ=255)                                                                                                              TGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCaa                                         <  5:186611‑M1/149‑1 (MQ=255)                                                                                                                tggaagcggccccgcgtcgcaaaaggccgcttccacaGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCa                                                                       >  6:253204‑M2/38‑117 (MQ=255)                                                                                                                tggaagcggccccccgtcgcaaaaggccgcttccacaGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCa                                                                       <  5:253204‑M2/80‑1 (MQ=255)                                                                                                                  gaagcggccccgcgtcgcaaaaggccgcttccacaGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAg                                                                                                >  5:232229‑M2/36‑90 (MQ=255)                                                                                                                  gaagcggccccgcgtcgcaaaaggccgcttccacaGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAg                                                                                                <  6:232229‑M2/55‑1 (MQ=255)                                                                                                                    AGCGTCATTTTGCGACGCGGGGCCTCTTCCACAGGTAGCTTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACTGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACa                                   >  1:313768‑M1/1‑149 (MQ=255)                                                                                                                           ttttGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATc                            >  6:40765/1‑149 (MQ=255)                                                                                                                                 gACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGt                      >  7:32020/1‑149 (MQ=255)                                                                                                                                            gcttccacaGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGaccccacccc           >  3:288196‑M2/10‑149 (MQ=255)                                                                                                                                                ccacaGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCgg                         <  6:111923‑M2/126‑1 (MQ=255)                                                                                                                                                ccacaGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCgg                         >  5:111923‑M2/6‑131 (MQ=255)                                                                                                                                                ccacaGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAg       >  8:27874‑M2/6‑149 (MQ=255)                                                                                                                                                 cacaGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTATCATCTCCCCAGCAATGGACa                                   <  4:137037‑M2/116‑1 (MQ=255)                                                                                                                                                   caGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGATGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGttt    <  4:157889‑M2/147‑1 (MQ=255)                                                                                                                                                    aGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGga                                <  1:174774‑M2/119‑1 (MQ=255)                                                                                                                                                    aGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGga                                >  2:174774‑M2/2‑120 (MQ=255)                                                                                                                                                     ggTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTcc  <  3:233337/149‑1 (MQ=255)                                                                                                                                                     ggTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTcc  <  6:186611/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCC  >  NC_002947/958271‑958567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.