New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1452064 =	29 (0.590)	3 (0.060)	3/240	NT	10.3%	coding (226/1542 nt)	PP_1271	putative Multidrug efflux MFS transporter
	?	NC_002947	1452131 =	25 (0.540)					coding (293/1542 nt)	PP_1271	putative Multidrug efflux MFS transporter

GGTGGTGGTCGGGCTGTTCGGTGTGTTGCTGGCTGTGCTGTGCGCCGGCCTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTT  >  NC_002947/1451922‑1452209                                                                                                                                               |                                                                                                                                                  agggccacgctcatcagcatcggcggcaaggcgccagcggcaaagccctgcagtacgcgcagcaacatcaggctgtgcaggttgggggcgaacggctgcagcaggccaagcacggcgaacagacccactgcgctcatggtgaAGcgccg                                                                                                                                             <  8:284620‑M1/7‑1 (MQ=255)           gggCTGTTCGGTGTGTTGCTGGCTGTGCTGTGCGCCGGCCTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGtctc                                                                                                                                   >  1:273775/1‑149 (MQ=255)               tGTTCGGTGTGTTGCTGGCTGTGCTGTGCGCCGGCCTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGc                                                                                                                                >  4:122700/1‑148 (MQ=255)                 ttCGGTGTGTTGCTGGCTGTGCTGTGCGCCGGACTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCAt                                                                                                                             >  6:37064/1‑149 (MQ=255)                   cGGTGTGTTGCTGGCTGTGCTGTGCGCCGGCCTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATg                                                                                                                            <  2:273775/148‑1 (MQ=255)                    ggTGTGTTGCTGGCTGTGCTGTGCGCCGGCCTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGc                                                                                                                          >  3:248563/1‑149 (MQ=255)                                 gccagcggcaaagccctgcagtacgcgcagcaacatcaggctatgcaggttgggggcgaacggctgcagcaggccaagcacggcgaacagacccactgcgctcatggtgaAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGtgg                                                                                                             <  2:11753‑M1/39‑1 (MQ=255)                                    tgctgtgcGCCGGCCTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGtggctg                                                                                                          <  4:248563/149‑1 (MQ=255)                                    tgctgtgcGCCGGCCTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGtggct                                                                                                           <  3:122700/148‑1 (MQ=255)                                       tgtgcGCCGGCCTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCttt                                                                                                                      <  6:169392/134‑1 (MQ=255)                                       tgtgcGCCGGCCTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCttt                                                                                                                      >  5:169392/1‑134 (MQ=255)                                        gtgcGCCGGCCTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCa                                                                                                      >  6:151478/1‑149 (MQ=255)                                        gtgcGCCGGCCTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCa                                                                                                      >  6:172981/1‑149 (MQ=255)                                                  cTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTtctc                                                                                            >  3:209237/1‑149 (MQ=255)                                                   tCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGc                                                                                                                                <  8:127665/112‑1 (MQ=255)                                                   tCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGc                                                                                                                                >  7:127665/1‑112 (MQ=255)                                                     aaCGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCt                                                                                         >  7:182684/1‑149 (MQ=255)                                                          gTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTgcggc                                                                                    <  5:151478/149‑1 (MQ=255)                                                            cagcaacatcaggctgtgcaggttgggggcgaacggctgcagcaggccaagcacggcgaacagacccactgcgctcatggtgaAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGgcgc                                                                                  >  5:264712‑M1/84‑149 (MQ=255)                                                              gTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCtt                                                                                >  3:128386/1‑149 (MQ=255)                                                                aacatcaggctatgcaggttgggggcgaacggctgcagcaggccaagcacggcgaacagacccactgcgctcatggtgaAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCa                                                                              >  1:11753‑M1/80‑149 (MQ=255)                                                                   cAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCa                                                                           >  7:199801/1‑149 (MQ=255)                                                                      gATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGa                                                                        <  5:172981/149‑1 (MQ=255)                                                                          tCCCTGGCCGATATCCGCGGCGCCAGGGGCAGCGGTGCCGACGCAGGTGCCTGGTGGCGGGCGGTATCCAGCGCCGCTTCGGTCTCGGCCATGGCCTGTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATgcgc                                                                      <  5:37064/147‑1 (MQ=255)                                                                                gCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTg                                                                <  8:182684/147‑1 (MQ=255)                                                                                                         tCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCctgctg                                     >  5:132627/1‑149 (MQ=255)                                                                                                         tCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCctgctg                                     <  8:199801/149‑1 (MQ=255)                                                                                                                cgacgaAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGt                              <  1:138740/149‑1 (MQ=255)                                                                                                                cgacgaAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGt                              >  2:138740/1‑149 (MQ=255)                                                                                                                 gacgaAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTgg                                                               >  4:183582/1‑115 (MQ=255)                                                                                                                 gacgaAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTgg                                                               <  3:183582/115‑1 (MQ=255)                                                                                                                  acgaAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTc                            <  4:128386/149‑1 (MQ=255)                                                                                                                                  gCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGcac             <  4:209237/148‑1 (MQ=255)                                                                                                                                            taCAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGtt  >  8:71124/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                  GGTGGTGGTCGGGCTGTTCGGTGTGTTGCTGGCTGTGCTGTGCGCCGGCCTCAACGAGTCGGTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTT  >  NC_002947/1451922‑1452209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.