New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1452064 =	29 (0.590)	3 (0.060)	3/240	NT	10.3%	coding (226/1542 nt)	PP_1271	putative Multidrug efflux MFS transporter
	?	NC_002947	1452131 =	25 (0.540)					coding (293/1542 nt)	PP_1271	putative Multidrug efflux MFS transporter

GTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTGCCGCCGATGCTGATGAGCGTGGCCCT  >  NC_002947/1451983‑1452272                                                                                                                                                     |                                                                                                                                              gTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCtt                                                                                                                                               >  3:128386/1‑149 (MQ=255)   aacatcaggctatgcaggttgggggcgaacggctgcagcaggccaagcacggcgaacagacccactgcgctcatggtgaAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCa                                                                                                                                             >  1:11753‑M1/80‑149 (MQ=255)      cAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCa                                                                                                                                          >  7:199801/1‑149 (MQ=255)         gATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGa                                                                                                                                       <  5:172981/149‑1 (MQ=255)             tCCCTGGCCGATATCCGCGGCGCCAGGGGCAGCGGTGCCGACGCAGGTGCCTGGTGGCGGGCGGTATCCAGCGCCGCTTCGGTCTCGGCCATGGCCTGTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATgcgc                                                                                                                                     <  5:37064/147‑1 (MQ=255)                   gCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTg                                                                                                                               <  8:182684/147‑1 (MQ=255)                                            tCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCctgctg                                                                                                    <  8:199801/149‑1 (MQ=255)                                            tCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCctgctg                                                                                                    >  5:132627/1‑149 (MQ=255)                                                   cgacgaAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGt                                                                                             <  1:138740/149‑1 (MQ=255)                                                   cgacgaAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGt                                                                                             >  2:138740/1‑149 (MQ=255)                                                    gacgaAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTgg                                                                                                                              <  3:183582/115‑1 (MQ=255)                                                    gacgaAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTgg                                                                                                                              >  4:183582/1‑115 (MQ=255)                                                     acgaAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTc                                                                                           <  4:128386/149‑1 (MQ=255)                                                                     gCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGcac                                                                            <  4:209237/148‑1 (MQ=255)                                                                               tgaagcgccgcagcgagaaggtcgtggccagccacggcgcaaaggccatggccgagaccgaagcggcgctTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCATAGCCTGATGtt                                                                 >  1:11753‑M2/71‑149 (MQ=255)                                                                               taCAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGtt                                                                 >  8:71124/1‑149 (MQ=255)                                                                                   gcgccgcagcgagaaggtcgtggccagccacggcgcaaaggccatggccgagaccgaagcggcgctTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTtgctg                                                             >  5:264712‑M2/67‑149 (MQ=255)                                                                                                ctcGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTACGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGc                                                                                                          <  4:241867/91‑1 (MQ=255)                                                                                                ctcGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTACGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGc                                                                                                          >  3:241867/1‑91 (MQ=255)                                                                                                        tGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGcc                                        <  7:71124/149‑1 (MQ=255)                                                                                                            cTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTg                                    >  3:83362/1‑149 (MQ=255)                                                                                                              ccacggcgcaaaggccatggccgagaccgaagcggcgctTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCATAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGgc                                  <  2:11753‑M2/110‑1 (MQ=255)                                                                                                                 ggtcGTGGCCAGCCACGCCCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACCGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGcc                               >  5:248755/4‑149 (MQ=255)                                                                                                                  gcCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCt                              >  8:41838/1‑149 (MQ=255)                                                                                                                        gctggcCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTgccgc                        >  2:195898/1‑149 (MQ=255)                                                                                                                          tggcCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTgccgcc                       >  1:24338/1‑148 (MQ=255)                                                                                                                           ggcCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTGCCGCCGa                     <  7:41838/149‑1 (MQ=255)                                                                                                                              cACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTGCCGCCGATGc                  >  7:284620/1‑149 (MQ=255)                                                                                                                               aCGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTGCCGCCGATGCt                 >  7:20158/1‑149 (MQ=255)                                                                                                                                   ccTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCAGGCGCCTTGCCGCCGATGCtgat              >  3:238311/1‑148 (MQ=255)                                                                                                                                           cTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTGCCGCCGATGCTGATGAGCGTGGc     <  8:20158/149‑1 (MQ=255)                                                                                                                                              cggcgctTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTGCCGCCGATGCTGATGAGCGTGGCCCt  <  8:284620‑M2/142‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              GTAACCAAGATTTCCCTGGCCGATATCCGCGGCGCCATGGGCATCGGTGCCGACGAAGGTGCCTGGTTGCTGGCGGTATACAGCGCCGCTTCGGTCTCGGCCATGGCCTTTGCGCCGTGGCTGGCCACGACCTTCTCGCTGCGGCGCTTCACCATGAGCGCAGTGGGTCTGTTCGCCGTGCTTGGCCTGCTGCAGCCGTTCGCCCCCAACCTGCACAGCCTGATGTTGCTGCGCGTACTGCAGGGCTTTGCCGCTGGCGCCTTGCCGCCGATGCTGATGAGCGTGGCCCT  >  NC_002947/1451983‑1452272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.