New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1638285 =	43 (0.870)	3 (0.060)	3/242	NT	7.3%	coding (455/1383 nt)	PP_1437	heavy metal sensor histidine kinase
	?	NC_002947	1638341 =	36 (0.770)					coding (399/1383 nt)	PP_1437	heavy metal sensor histidine kinase

GCCCGGCAATGCGCCGGAAGTGCCGCAATGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGCCGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTC  >  NC_002947/1638139‑1638430                                                                                                                                                    |                                                                                                                                                  gCCCGGCAATGCGCCGGAAGTGCCGCAATGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCgg                                                                                                                                                 >  7:277452/1‑149 (MQ=255) agtgtgctggctctcgacggccgccacccccacctgctcagcctcggcccggccctggaatcgcgggtcggtgaactgcacaccgatgcgcgcctggcctttcacgcctggcgtgacagcggcggtaaccagatcctcaccgttaccCg                                                                                                                                                  >  7:289827‑M1/148‑149 (MQ=255)   tgtgctggctctcgacggccgccacccccacctgctcagcctcggcccggccctggaatcgcgggtcggtgaactgcacaccgatgcgcgcctggcctttcacgcctggcgtgacagcggcggtaaccagatcctcaccgttaccCGGt                                                                                                                                                <  2:220883‑M1/4‑1 (MQ=255)   ccGGCAATGCGCCGGAAGTGCCGCAATGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGtt                                                                                                                                               <  8:22674/149‑1 (MQ=255)   ccGGCAATGCGCCGGAAGTGCCGCAATGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGtt                                                                                                                                               >  6:48939/1‑149 (MQ=255)     tgctggctctcgacggccgccacccccacctgctcagcctcggcccggccctggaatcgcgggtcggtgaactgcacaccgatgcgcgcctggcctttcacgcctggcgtgacagcggcggtaaccagatcctcaccgttaccCGGtt                                                                                                                                               >  1:20483‑M1/144‑148 (MQ=255)     tgctggctctcgacggccgccacccccacctgctcagcctcggcccggccctggaatcgcgggtcggtgaactgcacaccgatgcgcgcctggcctttcacgcctggcgtgacagcggcggtaaccagatcctcaccgttaccCGGtt                                                                                                                                               >  2:288401‑M1/144‑148 (MQ=255)       cAATGCGCCGGAAGTGCCGCAATGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGc                                                                                                                                           <  8:148794/149‑1 (MQ=255)          tGCGCCGGAAGTGCCGCAATGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGa                                                                                                                                         >  3:156029/1‑148 (MQ=255)             gcCGGAAGTGCCGCAATGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGAcatc                                                                                                                                     <  8:277452/149‑1 (MQ=255)                 gAAGTGCCGCAATGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACAtcatca                                                                                                                                 <  4:130302/149‑1 (MQ=255)                      gCCGCAATGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTTCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCtt                                                                                                                             <  5:48939/148‑1 (MQ=255)                          cAATGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAg                                                                                                                        >  3:278699/1‑149 (MQ=255)                           aaTGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACatcatc                                                                                                                                  >  2:25258/1‑138 (MQ=255)                           aaTGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACatcatc                                                                                                                                  <  1:25258/138‑1 (MQ=255)                            aTGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAggg                                                                                                                      >  3:34665/1‑149 (MQ=255)                            aTGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAggg                                                                                                                      <  4:122466/149‑1 (MQ=255)                            aTGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAggg                                                                                                                      <  4:127163/149‑1 (MQ=255)                                      gCCGCGCTGCATCAGCCACCATGCCCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCTAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGAc                                                                                                                          <  3:48717/136‑1 (MQ=255)                                      gCCGCGCTGAATCAGCCACCATGCCCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGAc                                                                                                                          >  4:48717/1‑136 (MQ=255)                                       ccGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTcgcg                                                                                                           >  7:125327/1‑149 (MQ=255)                                           gcTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAgg                                                                                                       <  4:67008/149‑1 (MQ=255)                                            cTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGgc                                                                                                      <  2:218167/149‑1 (MQ=255)                                                    gCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCtt                                                                                                                             <  8:246988/118‑1 (MQ=255)                                                    gCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCCCGGTTGAGCGACATCATCACCtt                                                                                                                             >  7:246988/1‑118 (MQ=255)                                                     ccaccaTG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAggg                                                                                                                      <  6:59434/124‑1 (MQ=255)                                                     ccaccaTG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAggg                                                                                                                      >  5:59434/1‑124 (MQ=255)                                                       accaTG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGgcgc                                                                                                    >  1:138098/1‑140 (MQ=255)                                                       accaTG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGgcgc                                                                                                    <  2:138098/140‑1 (MQ=255)                                                       accaTG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCgg                                                                                           <  4:34665/149‑1 (MQ=255)                                                         caTG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCggg                                                                                          >  8:240597/1‑148 (MQ=255)                                                            atcgcgggtcggtgaactgcacaccgatgcgcgcctggcctttcactcctggcgtgacagcggcggtaaccagatcctcaccgttaccCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCAGCAACCGGGTaa                                                                                       >  8:168992‑M1/89‑149 (MQ=255)                                                              cccccGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGGTGTCGCGCAGGCGCATCAACCGGGTAACg                                                                                     <  5:258574/149‑1 (MQ=255)                                                                 ccGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGt                                                                                   >  6:213249/1‑148 (MQ=255)                                                                        aaTCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCt                                                                           <  8:125327/149‑1 (MQ=255)                                                                        aaTCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCt                                                                           <  5:102958/149‑1 (MQ=255)                                                                        aaTCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCt                                                                           >  4:153586/1‑149 (MQ=255)                                                                          tCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTgg                                                                         <  4:156029/149‑1 (MQ=255)                                                                                      gCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAggg                                                                                                                      <  7:109427/92‑1 (MQ=255)                                                                                      gCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAggg                                                                                                                      >  8:109427/1‑92 (MQ=255)                                                                                          tGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGCCGCTGTCAc                                                         <  3:153586/149‑1 (MQ=255)                                                                                          gcgcctggcctttcacgcctggcgtgacagcggcggtaaccagatcctcaccgttaccCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCgg                                                                                           <  4:227537‑M1/57‑1 (MQ=255)                                                                                          gcgcctggcctttcacgcctggcgtgacagcggcggtaaccagatcctcaccgttaccCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCgg                                                                                           >  3:227537‑M1/59‑115 (MQ=255)                                                                                                      cAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGCCGCTGTCACGCCAGGCGTGaa                                             <  4:278699/149‑1 (MQ=255)                                                                                                       aaTGTCGAGTGCAGGTAGGCTTGCAGCATGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGCCGCTGTCACGCCAGGCGTGaaa                                            <  5:213249/149‑1 (MQ=255)                                                                                                        aTGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGt                                                                                   <  4:43677/109‑1 (MQ=255)                                                                                                        aTGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGt                                                                                   >  3:43677/1‑109 (MQ=255)                                                                                                        aTGTCGAGTGCAGGTAGGCATGCAGCAGGGCGTTGGCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGCTGAGGATCTGGTTACCGCCGCTGTCACGCCAGGCGTGAAAg                                           <  4:194138/149‑1 (MQ=255)                                                                                                                     gTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGa                                                                                 <  4:55068/98‑1 (MQ=255)                                                                                                                     gTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGa                                                                                 >  3:55068/1‑98 (MQ=255)                                                                                                                       aGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCGTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAAGGGTGAGGATCTGGTTACCGCCGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCg                            >  8:85636/1‑149 (MQ=255)                                                                                                                         gCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGCCGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGgt                          >  6:779/1‑149 (MQ=255)                                                                                                                                gcagGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGCCGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGt                   >  3:257062/1‑149 (MQ=255)                                                                                                                                                 gcgcGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGCCGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTc  >  4:262058/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GCCCGGCAATGCGCCGGAAGTGCCGCAATGGTTTCAGGCCGCGCTGCATCAGCCACCATG‑CCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGCCGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTC  >  NC_002947/1638139‑1638430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.