New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1638285 = | 43 (0.870) | 3 (0.060) | 3/242 | NT | 7.3% | coding (455/1383 nt) | PP_1437 | heavy metal sensor histidine kinase |
? | NC_002947 | 1638341 = | 36 (0.770) | coding (399/1383 nt) | PP_1437 | heavy metal sensor histidine kinase |
ACCATGCCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGTCGAGAGCCAGCACACT > NC_002947/1638193‑1638487 | accaTGCCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCgg < 4:34665/149‑1 (MQ=255) caTGCCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCggg > 8:240597/1‑148 (MQ=255) atcgcgggtcggtgaactgcacaccgatgcgcgcctggcctttcactcctggcgtgacagcggcggtaaccagatcctcaccgttaccCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCAGCAACCGGGTaa > 8:168992‑M1/89‑149 (MQ=255) cccccGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGGTGTCGCGCAGGCGCATCAACCGGGTAACg < 5:258574/149‑1 (MQ=255) ccGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGt > 6:213249/1‑148 (MQ=255) aaTCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCt < 5:102958/149‑1 (MQ=255) aaTCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCt > 4:153586/1‑149 (MQ=255) aaTCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCt < 8:125327/149‑1 (MQ=255) tCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTgg < 4:156029/149‑1 (MQ=255) tGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCAc < 3:153586/149‑1 (MQ=255) gcgcctggcctttcacgcctggcgtgacagcggcggtaaccagatcctcaccgttaccCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCgg > 3:227537‑M1/59‑115 (MQ=255) gcgcctggcctttcacgcctggcgtgacagcggcggtaaccagatcctcaccgttaccCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCgg < 4:227537‑M1/57‑1 (MQ=255) cAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGaa < 4:278699/149‑1 (MQ=255) aaTGTCGAGTGCAGGTAGGCTTGCAGCATGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGaaa < 5:213249/149‑1 (MQ=255) aTGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGt > 3:43677/1‑109 (MQ=255) aTGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGt < 4:43677/109‑1 (MQ=255) aTGTCGAGTGCAGGTAGGCATGCAGCAGGGCGTTGGCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGCTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAg < 4:194138/149‑1 (MQ=255) gTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGa < 4:55068/98‑1 (MQ=255) gTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGa > 3:55068/1‑98 (MQ=255) aGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCGTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAAGGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCg > 8:85636/1‑149 (MQ=255) gCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGgt > 6:779/1‑149 (MQ=255) gcagGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGt > 3:257062/1‑149 (MQ=255) ttacccggttgctgcgcctgcgcgacaacacccctgtcaaggtgatgatgtcgctcaaccgGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGAGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGAt > 8:168992‑M2/62‑149 (MQ=255) gcgcGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTc > 4:262058/1‑149 (MQ=255) ccggttgatgcgcctgcgcgacaacacccctgtcaaggtgatgatgtcgctcaaccgGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGgcgc < 4:227537‑M2/58‑1 (MQ=255) ccggttgatgcgcctgcgcgacaacacccctgtcaaggtgatgatgtcgctcaaccgGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGgcgc > 3:227537‑M2/58‑115 (MQ=255) GGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGt < 5:315211‑M1/128‑1 (MQ=255) GGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGt > 6:315211‑M1/1‑128 (MQ=255) GGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAgg > 7:240597‑M1/1‑149 (MQ=255) GTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAggg < 7:64357‑M1/149‑1 (MQ=255) catcaCCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGc > 8:207438/1‑149 (MQ=255) ccTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAg > 1:130265/1‑148 (MQ=255) tGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGACAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAgg > 3:309687/1‑149 (MQ=255) aCAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTg > 7:251082/1‑149 (MQ=255) ggggggTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGAATCCAGGGCCGGGCCGAGGCTGAGCAGGTgggg < 5:779/149‑1 (MQ=255) tgttgtCGCGCAGGCTCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTgg < 7:151712/143‑1 (MQ=255) tgttgtCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTgg > 8:151712/1‑143 (MQ=255) tCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTggcggc < 8:251082/148‑1 (MQ=255) tCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGATTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGcc > 1:56711/1‑149 (MQ=255) gcgcAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGa > 5:151061/1‑128 (MQ=255) gcgcAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGa < 6:151061/128‑1 (MQ=255) gcgcAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGt > 6:84806/1‑149 (MQ=255) gcgcAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGt > 2:43736/1‑149 (MQ=255) cgcAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGCGCGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGt > 1:220883/1‑149 (MQ=255) cgcAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGAGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGTc < 3:262058/149‑1 (MQ=255) gcAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGTGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAgggccgg < 1:86201/115‑1 (MQ=255) gcAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAgggccgg > 2:86201/1‑115 (MQ=255) gcAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGTc > 5:322961/1‑148 (MQ=255) gcgcATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTg > 5:67882/1‑129 (MQ=255) gcgcATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTg < 6:67882/129‑1 (MQ=255) gcgcATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGTCGagag > 7:92856/1‑149 (MQ=255) gcATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAg > 2:189610/1‑124 (MQ=255) gcATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAg < 1:189610/124‑1 (MQ=255) gcATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGTCGAGAGc > 5:318550/1‑148 (MQ=255) gcATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGTCGAGAGc > 7:176910/1‑148 (MQ=255) aTCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGTCGAGAGCCAg > 6:162790/1‑149 (MQ=255) aaccgGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGTCGAGAGCCAGca > 2:288401‑M2/6‑148 (MQ=255) aaccgGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGTCGAGAGCCAGca > 1:20483‑M2/6‑148 (MQ=255) accgGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGTCGAGAGCCAGcaca < 2:220883‑M2/145‑1 (MQ=255) cgGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGTCGAGAGCCAGCACACt > 7:289827‑M2/3‑149 (MQ=255) | ACCATGCCCCCGCACCAATCAAAACCAGTAGCAGTGGCAAGGCGAGCAATGTCGAGTGCAGGTAGGCTTGCAGCAGGGCGTTGTCGTCGGCGCGGTTGAGCGACATCATCACCTTGACAGGGGTGTTGTCGCGCAGGCGCATCAACCGGGTAACGGTGAGGATCTGGTTACCGC‑CGCTGTCACGCCAGGCGTGAAAGGCCAGGCGCGCATCGGTGTGCAGTTCACCGACCCGCGATTCCAGGGCCGGGCCGAGGCTGAGCAGGTGGGGGTGGCGGCCGTCGAGAGCCAGCACACT > NC_002947/1638193‑1638487 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |