New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1710452 =	40 (0.810)	3 (0.060)	3/246	NT	6.9%	coding (1071/2628 nt)	ppc	phosphoenolpyruvate carboxylase
	?	NC_002947	1710524 =	42 (0.890)					coding (1143/2628 nt)	ppc	phosphoenolpyruvate carboxylase

CTGTGCTCAAGCAACTGCGCGACCGCCTGCGTGCGACACGCGCATGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATA  >  NC_002947/1710313‑1710596                                                                                                                                            |                                                                                                                                                 cTGTGCTCAAGCAACTGCGCGACCGCCTGCGTGCGACACGCGCATGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCAc                                                                                                                                         <  6:75884/149‑1 (MQ=255)         aaGCAACTGCGCGACCGCCTGCGTGCGACACGCGCATGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCgg                                                                                                                                 >  8:6089/1‑149 (MQ=255)                    cgACCGCCTGCGTGCGACACGCGCATGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGa                                                                                                                      <  4:25702/149‑1 (MQ=255)                      aCCGCCTGCGTGCGACACGCGCATGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATc                                                                                                                    <  2:262324/149‑1 (MQ=255)                        cGCCTGCGTGCGACACGCGCATGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGc                                                                                                                  <  4:247798/149‑1 (MQ=255)                              cgtgcgACACGCGCATGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAggg                                                                                                            <  2:10032/149‑1 (MQ=255)                                  cgACACGCGCATGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCg                                                                                                        >  6:149334/1‑149 (MQ=255)                                        gcgcATGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAAt                                                                                                                                     <  4:244448/114‑1 (MQ=255)                                        gcgcATGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAAt                                                                                                                                     >  3:244448/1‑114 (MQ=255)                                            aTGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACt                                                                                              <  7:6089/149‑1 (MQ=255)                                            aTGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACt                                                                                              >  5:2974/1‑149 (MQ=255)                                                gcgcATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCg                                                                                                                         <  4:178150/118‑1 (MQ=255)                                                gcgcATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCg                                                                                                                         >  3:178150/1‑118 (MQ=255)                                                gcgcATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCtt                                                                                          <  4:299216/149‑1 (MQ=255)                                                     ttCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCTGAGGGGCCGCTGCTCGACTGCTTGcgtc                                                                                     >  4:10851/1‑149 (MQ=255)                                                       caggtaatcggttatctcggtcagcgcatcacggtggcgggcagcgtcctggcgtacgtccaggcggcccaggaacaggccgaagGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGcgtcgt                                                                                   <  7:134867‑M1/64‑1 (MQ=255)                                                         gCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGc                                                                                 >  5:101383/1‑149 (MQ=255)                                                                 cAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCt                                                                                           <  6:180366/131‑1 (MQ=255)                                                                 cAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCt                                                                                           >  5:180366/1‑131 (MQ=255)                                                                  ttatctcggtcagcgcatcacggtggcgggcagcgtcctggcgtacgtccaggcggcccaggaacaggccgaagGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCtt                                                                        >  8:134867‑M1/75‑149 (MQ=255)                                                                      accaaccGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGc                                                                    <  6:2974/149‑1 (MQ=255)                                                                       ccaaccGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGcc                                                                   >  2:186614/1‑149 (MQ=255)                                                                         ggtcagcgcatcacggtggcgggcagcgtcctggcgtacgtccaggcggcccaggaacaggccgaagGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCgg                                                                     >  5:232788‑M1/68‑145 (MQ=255)                                                                                cggTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTgg                                                          <  6:101383/149‑1 (MQ=255)                                                                                                gtggACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTAc                                           <  1:186614/148‑1 (MQ=255)                                                                                                   gACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGc                                         >  8:208486/1‑147 (MQ=255)                                                                                                   gACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGc                                         >  7:297449/1‑147 (MQ=255)                                                                                                   gACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCa                                       <  8:297449/149‑1 (MQ=255)                                                                                                        ccGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACg                                  >  8:109391/1‑149 (MQ=255)                                                                                                        ccGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACg                                  >  7:71835/1‑149 (MQ=255)                                                                                                              gCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGccc                            >  4:191966/1‑149 (MQ=255)                                                                                                                 gATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGc                                                                    >  4:151641/1‑106 (MQ=255)                                                                                                                 gATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGc                                                                    <  3:151641/106‑1 (MQ=255)                                                                                                                 gATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGc                          >  2:227256/1‑148 (MQ=255)                                                                                                                  aTCGCGCCGCGGGAGCTGTGCTACCAGTCACTGCACGAATGCGGCATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGc                          <  4:67613/147‑1 (MQ=255)                                                                                                                     gcgcCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCg                     >  1:156786/1‑149 (MQ=255)                                                                                                                      cgccgcTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGt                    >  6:199634/1‑149 (MQ=255)                                                                                                                       gccgcTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGt                    >  1:144274/1‑148 (MQ=255)                                                                                                                        ccgcTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCTGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGa                  <  3:10851/149‑1 (MQ=255)                                                                                                                         cgcTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGAt                 <  5:199634/149‑1 (MQ=255)                                                                                                                            tGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATgcg              >  3:173160/1‑149 (MQ=255)                                                                                                                                    tgCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCg       <  2:156786/148‑1 (MQ=255)                                                                                                                                      cTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCgag     <  1:227256/148‑1 (MQ=255)                                                                                                                                        aCCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCAAGATa  >  5:181149/1‑149 (MQ=255)                                                                                                                                         ccAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGAt   <  7:208486/147‑1 (MQ=255)                                                                                                                                          cAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGa                                                >  4:282721/1‑101 (MQ=255)                                                                                                                                          cAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGa                                                <  3:282721/101‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                 CTGTGCTCAAGCAACTGCGCGACCGCCTGCGTGCGACACGCGCATGGGCGCATTCGGCCTTGACCAGCAACCAACCGGCCGGTGCCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATA  >  NC_002947/1710313‑1710596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.