New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1855558	37 (0.750)	4 (0.090)	4/240	NT	9.8%	coding (570/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	= 1855620	39 (0.840)					coding (632/1341 nt)	PP_1659	hypothetical protein

CCGTTCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCC  >  NC_002947/1855415‑1855705                                                                                                                                                |                                                                                                                                                    ccGTTCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCg                                                                                                                                                >  3:272319/1‑149 (MQ=255)   gTTCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCa                                                                                                                                              >  1:62176/1‑149 (MQ=255)    ttCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCAt                                                                                                                                             <  6:297050/149‑1 (MQ=255)      cAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATc                                                                                                                                            <  4:272319/148‑1 (MQ=255)         gACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCtt                                                                                                                                        >  4:306238/1‑149 (MQ=255)           ccGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTc                                                                                                                                      <  3:306238/149‑1 (MQ=255)            cGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCg                                                                                                                                     >  5:111568/1‑149 (MQ=255)             ggCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTctc                                                                                                                                    <  7:61352/149‑3 (MQ=255)             ggCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGc                                                                                                                                    <  2:62176/149‑1 (MQ=255)                    tGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACttgaccatgatcgcgccgacctgc                                                                                                                             >  6:77466‑M1/1‑125 (MQ=255)                          aCCAAAGCGGCACTTACACGCGCAACTCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACACTGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCaa                                                                                                                       <  5:250180/149‑1 (MQ=255)                          aCCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCaa                                                                                                                       <  5:124405/149‑1 (MQ=255)                                gCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGAcc                                                                                                                 <  6:111568/149‑1 (MQ=255)                                       ttACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAgg                                                                                                          >  7:181535/1‑149 (MQ=255)                                       ttACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAgg                                                                                                          >  4:20405/1‑149 (MQ=255)                                       ttACACGCGCAACGCGATCATGGTCAACAAGCCGATGTTCGATGACATCGTCATCAATGGCCTGTACAGCAAGGAGGGCCTGCAAGCGTTGCTGAGCAAGGCCGACAACACCATCGCTTTCGCCTGCGGTTCGCAAATGACGAAGCAgg                                                                                                          >  2:109297/1‑149 (MQ=255)                                                     cgATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATg                                                                                            <  4:274108/149‑1 (MQ=255)                                                        tCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGt                                                                                          >  4:62905/1‑148 (MQ=255)                                                            ggTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgt                                                                                     <  3:65578‑M2/149‑3 (MQ=255)                                                             gTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACttgaccatgatcgcgccgacctgctgggtcttttgcgaaccgcaggcgaaagcgatgcggttgtc                                                                                    <  5:77466‑M1/149‑66 (MQ=255)                                                                aaCCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgtcggc                                                                                 <  6:199389‑M2/149‑7 (MQ=255)                                                                  ccAGCCGATGTTCCTAGCCATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACTACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgtcggcct                                                                               >  1:109297‑M2/1‑141 (MQ=255)                                                                     gCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACttgaccatgatctcgccgacctgctgggtcttttgcgaaccgcaggcgaaagcgatgcggttgtcggccttg                                                                             <  4:34999‑M1/148‑73 (MQ=255)                                                                     gCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACttgaccatgatcgcgccgacctgctgggtcttttgcgaaccgcaggcgaaagcgatgcggttgtcggccttg                                                                             >  3:34999‑M1/1‑76 (MQ=255)                                                                         aTGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGt                                                                        <  3:62905/149‑1 (MQ=255)                                                                            ttCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGc                                                                      <  3:20405/148‑1 (MQ=255)                                                                            ttCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGc                                                                      <  7:24137/148‑1 (MQ=255)                                                                                         tCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGa                                                         >  7:272615/1‑148 (MQ=255)                                                                                          caacaaTGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTTAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGAc                                                        >  6:220615/1‑148 (MQ=255)                                                                                             caaTGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAAcc                                                    >  5:173052/1‑149 (MQ=255)                                                                                                  gCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAg                                               >  7:192798/1‑149 (MQ=255)                                                                                                      gTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAAc                                                     <  3:268991/139‑1 (MQ=255)                                                                                                      gTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAAc                                                     >  4:268991/1‑139 (MQ=255)                                                                                                       tACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGtt                                          <  8:181535/149‑1 (MQ=255)                                                                                                         cAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTcc                                        <  6:173052/149‑1 (MQ=255)                                                                                                               ggaggGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCg                                  >  4:59050/1‑149 (MQ=255)                                                                                                                     ccAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgtcggcct                                                                               <  7:293072‑M2/98‑9 (MQ=255)                                                                                                                     ccAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgtcggcct                                                                               >  8:293072‑M2/1‑90 (MQ=255)                                                                                                                     ccAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAg                                                                         <  1:157953/104‑1 (MQ=255)                                                                                                                     ccAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAg                                                                         >  2:157953/1‑104 (MQ=255)                                                                                                                         cAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGa                                                                  <  8:126446/107‑1 (MQ=255)                                                                                                                           aGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTgg                      <  4:232434/149‑1 (MQ=255)                                                                                                                            gCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGt                     >  1:57366/1‑149 (MQ=255)                                                                                                                            gCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGt                     <  5:220615/149‑1 (MQ=255)                                                                                                                               gtCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTa                  <  8:147789/148‑1 (MQ=255)                                                                                                                                  cTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTacac               >  5:223894/1‑149 (MQ=255)                                                                                                                                       cAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgtcggccttgctcaggaacgcttgctggccctccttgctgtacaggccattgttgacgatgtcatcgaacatcggc           >  3:34999‑M2/1‑72 (MQ=255)                                                                                                                                       cAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCg          <  2:154396/149‑1 (MQ=255)                                                                                                                                       cAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGAGATCATGGTCAAgtcggccttgctcaggaacgcttgctggccctccttgctgtacaggccattgttgacgatgtcatcgaacatcggc           <  4:34999‑M2/148‑77 (MQ=255)                                                                                                                                         aGGCCGACttgaccatgatcgcgccgacctgctgggtcttttgcgaaccgcaggcgaaagcgatgcggttgtcggccttgctcaggaacgcttgctgg                                                           <  7:293072‑M1/98‑91 (MQ=255)                                                                                                                                         aGGCCGACttgaccatgatcgcgccgacctgctgggtcttttgcgaaccgcaggcgaaagcgatgcggttgtcggccttgctcaggaacgcttgctgg                                                           >  8:293072‑M1/1‑8 (MQ=255)                                                                                                                                         aGGCCGACttgaccatgatcgcgccgacctgctgggtcttttgcgaaccgcaggcgaaagcgatgcggtagtcggccttgctcaggaacgcttgctggccctccttgctgtacaggccattgttgacgatggctaggaacatcggctgg        >  1:109297‑M1/1‑8 (MQ=255)                                                                                                                                           gCCGACttgaccatgatcgcgccgacctgctgggtcttttgcgaaccgcaggcgaaagcgatgcggttgtcggccttgctcaggaacgcttgctggccctccttgctgtacaggccattgttgacgatgtcatcgaacatcggctggtt      <  6:199389‑M1/149‑144 (MQ=255)                                                                                                                                              gACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgtcggccttgctcaggaacgcttgctggccctccttgctgtacaggccattgttgacgatgtcatcgaacatcggctggttgac   <  5:77466‑M2/149‑85 (MQ=255)                                                                                                                                              gACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGc   <  3:59050/149‑1 (MQ=255)                                                                                                                                              gACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGAAGTAGTTACACGCCGTCGACTCGCTGGTCTACACCCCCGGCAACGc   <  8:192798/149‑1 (MQ=255)                                                                                                                                               aCttgaccatgatcgcgccgacctgctgggtcttttgcgaaccgcaggcgaaagcgatgcggttgtcggccttgctcaggaacgcttgctggccctccttgctgtacaggccattgttgacgatgtcatcgaacatcggctggttgacc  <  3:65578‑M1/149‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                    CCGTTCAAGACCGGCCCGCTGGTTGACCAAAGCGGCACTTACACGCGCAACGCGATCATGGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCC  >  NC_002947/1855415‑1855705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.