New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1855558	37 (0.750)	4 (0.090)	4/240	NT	9.8%	coding (570/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	= 1855620	39 (0.840)					coding (632/1341 nt)	PP_1659	hypothetical protein

GGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAA  >  NC_002947/1855474‑1855752                                                                                                                                                   |                                                                                                                                     ggTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgt                                                                                                                                    <  3:65578‑M2/149‑3 (MQ=255)     aaCCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgtcggc                                                                                                                                <  6:199389‑M2/149‑7 (MQ=255)       ccAGCCGATGTTCCTAGCCATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACTACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgtcggcct                                                                                                                              >  1:109297‑M2/1‑141 (MQ=255)              aTGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGt                                                                                                                       <  3:62905/149‑1 (MQ=255)                 ttCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGc                                                                                                                     <  7:24137/148‑1 (MQ=255)                 ttCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGc                                                                                                                     <  3:20405/148‑1 (MQ=255)                              tCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGa                                                                                                        >  7:272615/1‑148 (MQ=255)                               caacaaTGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTTAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGAc                                                                                                       >  6:220615/1‑148 (MQ=255)                                  caaTGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAAcc                                                                                                   >  5:173052/1‑149 (MQ=255)                                       gCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAg                                                                                              >  7:192798/1‑149 (MQ=255)                                           gTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAAc                                                                                                    <  3:268991/139‑1 (MQ=255)                                           gTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAAc                                                                                                    >  4:268991/1‑139 (MQ=255)                                            tACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGtt                                                                                         <  8:181535/149‑1 (MQ=255)                                              cAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTcc                                                                                       <  6:173052/149‑1 (MQ=255)                                                    ggaggGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCg                                                                                 >  4:59050/1‑149 (MQ=255)                                                          ccAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgtcggcct                                                                                                                              <  7:293072‑M2/98‑9 (MQ=255)                                                          ccAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgtcggcct                                                                                                                              >  8:293072‑M2/1‑90 (MQ=255)                                                          ccAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAg                                                                                                                        <  1:157953/104‑1 (MQ=255)                                                          ccAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAg                                                                                                                        >  2:157953/1‑104 (MQ=255)                                                              cAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGa                                                                                                                 <  8:126446/107‑1 (MQ=255)                                                                aGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTgg                                                                     <  4:232434/149‑1 (MQ=255)                                                                 gCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGt                                                                    >  1:57366/1‑149 (MQ=255)                                                                 gCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGt                                                                    <  5:220615/149‑1 (MQ=255)                                                                    gtCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTa                                                                 <  8:147789/148‑1 (MQ=255)                                                                       cTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTacac                                                              >  5:223894/1‑149 (MQ=255)                                                                            cAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgtcggccttgctcaggaacgcttgctggccctccttgctgtacaggccattgttgacgatgtcatcgaacatcggc                                                          >  3:34999‑M2/1‑72 (MQ=255)                                                                            cAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCg                                                         <  2:154396/149‑1 (MQ=255)                                                                            cAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGAGATCATGGTCAAgtcggccttgctcaggaacgcttgctggccctccttgctgtacaggccattgttgacgatgtcatcgaacatcggc                                                          <  4:34999‑M2/148‑77 (MQ=255)                                                                                   gACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAgtcggccttgctcaggaacgcttgctggccctccttgctgtacaggccattgttgacgatgtcatcgaacatcggctggttgac                                                  <  5:77466‑M2/149‑85 (MQ=255)                                                                                   gACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGc                                                  <  3:59050/149‑1 (MQ=255)                                                                                   gACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGAAGTAGTTACACGCCGTCGACTCGCTGGTCTACACCCCCGGCAACGc                                                  <  8:192798/149‑1 (MQ=255)                                                                                         cGCATCGCTTTCGCCTGCGGTTCGCAAGAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGAccc                                            >  3:9980/1‑149 (MQ=255)                                                                                                   tCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAggg                                   <  5:199389/148‑1 (MQ=255)                                                                                                            gTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGAc                                                                            <  2:226695/98‑1 (MQ=255)                                                                                                            gTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGAc                                                                            >  1:226695/1‑98 (MQ=255)                                                                                                            gTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATc                         >  8:89481/1‑149 (MQ=255)                                                                                                             ttCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATcc                        <  2:57366/149‑1 (MQ=255)                                                                                                                 cAAAAGACCCAGCAGTTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGa                    <  4:65578/149‑1 (MQ=255)                                                                                                                      gACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGt               <  6:223894/149‑1 (MQ=255)                                                                                                                      gACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGt               <  5:260412/149‑1 (MQ=255)                                                                                                                          cagcagGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGTTCTACACCCCCGGCAACGCCGa                                               <  6:289800/113‑1 (MQ=255)                                                                                                                          cagcagGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGa                                               >  5:289800/1‑113 (MQ=255)                                                                                                                           agcagGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATCGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAAt          >  6:64439/1‑149 (MQ=255)                                                                                                                            gcagGTCGGCGCGATCATGGTCAAgtcggccttgctcaggaacgcttgctggccctccttgctgtacaggccattgttgacgatgtcatcgaacatcggctggttgaccatgatcgcgttgcgcgtgtaagtgccgctttggtcaacca         >  6:77466‑M2/1‑24 (MQ=255)                                                                                                                                gTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATgcg       >  8:5663/1‑147 (MQ=255)                                                                                                                                   ggCGCGATCATGGTCAAGTCGGCCGGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGaa  <  8:272615/149‑1 (MQ=255)                                                                                                                                            aTGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGt               <  7:168891/127‑1 (MQ=255)                                                                                                                                            aTGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGt               >  8:168891/1‑127 (MQ=255)                                                                                                                                                   |                                                                                                                                     GGTCAACCAGCCGATGTTCGATGACATCGTCAACAATGGCCTGTACAGCAAGGAGGGCCAGCAAGCGTTCCTGAGCAAGGCCGACAACCGCATCGCTTTCGCCTGCGGTTCGCAAAAGACCCAGCAGGTCGGCGCGATCATGGTCAAGTCGGCCTGGAAAGTGCTCGATGGCAGCGACAACCCGCAGGAGTTCCACGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAA  >  NC_002947/1855474‑1855752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.