New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2562510	40 (0.810)	3 (0.070)	3/238	NT	7.5%	coding (248/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
	?	NC_002947	= 2562545	37 (0.810)					coding (283/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase

GTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGA  >  NC_002947/2562363‑2562657                                                                                                                                                      |                                                                                                                                                    gTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGctg‑‑ctg                                                                                                                                                    <  4:220807/149‑1 (MQ=255)              tGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGct                                                                                                                                       >  8:291309/1‑149 (MQ=255)                    ccATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGctgtctgt                                                                                                                                 <  3:294678/149‑1 (MQ=255)                                    tCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTg                                                                                                                   >  2:98362/1‑147 (MQ=255)                                     cggcggCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑TTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGa                                                                                                                 >  5:279483‑M2/1‑147 (MQ=255)                                            cATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTccaggctggccacatacagacagcctcgcggctccagcagcggg                                                                                                         <  7:170652‑M1/149‑45 (MQ=255)                                              tGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGaa                                                                                                       >  2:276188/1‑149 (MQ=255)                                               gTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTccaggctggccacatacagacagcctcgcggctccagcagcgggt                                                                                                        >  3:289146‑M1/1‑102 (MQ=255)                                               gTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTccaggctggccacatacagacagcctcgcggctccagcagcgggt                                                                                                        <  4:289146‑M1/147‑46 (MQ=255)                                                ttCATGGAGGCTTACGGCACCCCACAGATCCATGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAAc                                                                                                      <  8:21969/148‑1 (MQ=255)                                                   aTGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCt                                                                                                  >  5:34149/1‑149 (MQ=255)                                                    tGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGaa                                                                                                       <  6:170117/143‑1 (MQ=255)                                                    tGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGaa                                                                                                       >  5:170117/1‑143 (MQ=255)                                                    tGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCtt                                                                                                 >  4:90505/1‑149 (MQ=255)                                                      gAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTg                                                                                                <  6:147104/148‑1 (MQ=255)                                                      gAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa                                                                                               <  3:308423/149‑1 (MQ=255)                                                                 cACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTcg                                                                                    <  2:261357/149‑1 (MQ=255)                                                                 cACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTc                                                                                     >  3:44683/1‑148 (MQ=255)                                                                 cACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTc                                                                                     <  4:44683/148‑1 (MQ=255)                                                                    cccACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGTCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTcgcg                                                                                  <  1:97355/148‑1 (MQ=255)                                                                    cccACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGTCCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTcgc                                                                                   <  1:98362/149‑1 (MQ=255)                                                                    cccACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGaa                                                                                                       >  6:199691/1‑127 (MQ=255)                                                                    cccACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGaa                                                                                                       <  5:199691/127‑1 (MQ=255)                                                                    cccACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTcgcg                                                                                  >  2:97355/1‑148 (MQ=255)                                                                    cccACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCgcgc                                                                                 <  3:90505/149‑1 (MQ=255)                                                                         aGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAAc                                                                            <  6:34149/149‑1 (MQ=255)                                                                            tCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCCGCCTGGAGCAGCGGGAACTGccc                                                                                                 >  4:268484/1‑123 (MQ=255)                                                                             ccAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa                                                                                               >  5:206763/1‑126 (MQ=255)                                                                             ccAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa                                                                                               <  6:206763/126‑1 (MQ=255)                                                                              cAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGc                                                                       >  2:226444/1‑149 (MQ=255)                                                                                       aCCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCgcgc                                                                                 <  3:203678/130‑1 (MQ=255)                                                                                       aCCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCgcgc                                                                                 >  4:203678/1‑130 (MQ=255)                                                                                         ccGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa                                                                                               >  7:28163/1‑114 (MQ=255)                                                                                         ccGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa                                                                                               <  8:28163/114‑1 (MQ=255)                                                                                         ccGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGca                                                               >  6:79615/1‑146 (MQ=255)                                                                                         ccGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGca                                                               >  2:208614/1‑146 (MQ=255)                                                                                          cgcgCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAg                                                            >  2:102323/1‑148 (MQ=255)                                                                                                         ttCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGa                                            >  4:234492/1‑149 (MQ=255)                                                                                                               gAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa                                                                                               <  7:157641/92‑1 (MQ=255)                                                                                                               gAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa                                                                                               >  8:157641/1‑92 (MQ=255)                                                                                                                   cgcCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGAcgcg                                  <  1:208614/149‑1 (MQ=255)                                                                                                                                       gAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAg              >  5:88197/1‑149 (MQ=255)                                                                                                                                           aCCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGagcagcgggtgctcgcagaagccctgcggtggcgcttcgtagaaggcccggctggcgcgggtcagtgcctggatctgtggggtgccgtaagcctccatgaac            >  3:289146‑M2/1‑45 (MQ=255)                                                                                                                                           aCCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGagcagcgggtgctcgcagaagccctgcggtggcgcttcgtagaaggcccggctggcgcgggtcagtgcctggatctgtggggtgccgtaagcctccatgaac            <  4:289146‑M2/147‑103 (MQ=255)                                                                                                                                            cccGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGagcagcgggtgctcgcagaagccctgcggtggcgcttcgtagaaggcccggctggcgcgggtcagtgcctggatctgtggggtgccgtaagcctccatgaacatg         <  7:170652‑M2/149‑106 (MQ=255)                                                                                                                                              cGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCCGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGt       <  6:88197/149‑1 (MQ=255)                                                                                                                                              cGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGt       <  5:79615/149‑1 (MQ=255)                                                                                                                                              cGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGt       >  8:41359/1‑149 (MQ=255)                                                                                                                                                      tccaggctggccacatacagacagcctcgcggctccaacagcgggtgctcgcagaagccctgcggtggcgcttcgtagaaggcccggctggcgcgggtcagtgcctggatctgtggggtgccgtaagcctccatgaacatggccgccg  >  5:279483‑M1/1‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    GTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGA  >  NC_002947/2562363‑2562657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.