New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2562510 | 40 (0.810) | 3 (0.070) | 3/238 | NT | 7.5% | coding (248/1137 nt) | dauA | FAD‑dependent catabolic D‑arginine dehydrogenase |
? | NC_002947 | = 2562545 | 37 (0.810) | coding (283/1137 nt) | dauA | FAD‑dependent catabolic D‑arginine dehydrogenase |
CGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCTGGCCGGCGCGGTGCTTGAGCCAGGTG > NC_002947/2562399‑2562689 | cggcggCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑TTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGa > 5:279483‑M2/1‑147 (MQ=255) tGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGaa > 2:276188/1‑149 (MQ=255) ttCATGGAGGCTTACGGCACCCCACAGATCCATGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAAc < 8:21969/148‑1 (MQ=255) aTGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCt > 5:34149/1‑149 (MQ=255) tGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGaa > 5:170117/1‑143 (MQ=255) tGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGaa < 6:170117/143‑1 (MQ=255) tGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCtt > 4:90505/1‑149 (MQ=255) gAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTg < 6:147104/148‑1 (MQ=255) gAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa < 3:308423/149‑1 (MQ=255) cACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTcg < 2:261357/149‑1 (MQ=255) cACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTc > 3:44683/1‑148 (MQ=255) cACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTc < 4:44683/148‑1 (MQ=255) cccACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGTCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTcgcg < 1:97355/148‑1 (MQ=255) cccACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGTCCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTcgc < 1:98362/149‑1 (MQ=255) cccACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGaa > 6:199691/1‑127 (MQ=255) cccACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGaa < 5:199691/127‑1 (MQ=255) cccACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTcgcg > 2:97355/1‑148 (MQ=255) cccACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCgcgc < 3:90505/149‑1 (MQ=255) aGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAAc < 6:34149/149‑1 (MQ=255) tCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCCGCCTGGAGCAGCGGGAACTGccc > 4:268484/1‑123 (MQ=255) ccAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa < 6:206763/126‑1 (MQ=255) ccAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa > 5:206763/1‑126 (MQ=255) cAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGc > 2:226444/1‑149 (MQ=255) aCCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCgcgc > 4:203678/1‑130 (MQ=255) aCCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCgcgc < 3:203678/130‑1 (MQ=255) ccGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa > 7:28163/1‑114 (MQ=255) ccGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa < 8:28163/114‑1 (MQ=255) ccGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGca > 6:79615/1‑146 (MQ=255) ccGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGca > 2:208614/1‑146 (MQ=255) cgcgCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAg > 2:102323/1‑148 (MQ=255) ttCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGa > 4:234492/1‑149 (MQ=255) gAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa > 8:157641/1‑92 (MQ=255) gAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGa < 7:157641/92‑1 (MQ=255) cgcCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGAcgcg < 1:208614/149‑1 (MQ=255) gAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAg > 5:88197/1‑149 (MQ=255) aCCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGagcagcgggtgctcgcagaagccctgcggtggcgcttcgtagaaggcccggctggcgcgggtcagtgcctggatctgtggggtgccgtaagcctccatgaac < 4:289146‑M2/147‑103 (MQ=255) aCCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGagcagcgggtgctcgcagaagccctgcggtggcgcttcgtagaaggcccggctggcgcgggtcagtgcctggatctgtggggtgccgtaagcctccatgaac > 3:289146‑M2/1‑45 (MQ=255) cccGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGagcagcgggtgctcgcagaagccctgcggtggcgcttcgtagaaggcccggctggcgcgggtcagtgcctggatctgtggggtgccgtaagcctccatgaacatg < 7:170652‑M2/149‑106 (MQ=255) cGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCCGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGt < 6:88197/149‑1 (MQ=255) cGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGt > 8:41359/1‑149 (MQ=255) cGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGt < 5:79615/149‑1 (MQ=255) cgAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCt > 6:163224/1‑146 (MQ=255) cgAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCt < 5:163224/146‑1 (MQ=255) tgtgGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCTGGCCGGCGCGGTGCtt < 3:234492/148‑1 (MQ=255) tgGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCTGGCCGGCGCGGTGCTTGAg > 8:112988/1‑149 (MQ=255) gCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCTGGCCGGCGCGGTGCTTGAGc > 8:21314/1‑148 (MQ=255) cAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCTGGCCGGCGCGGTGCTTGAGCCAg < 1:276188/149‑1 (MQ=255) ccTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCTGGCCGGCGCGGTGCTTGAGCCAGGTg > 1:58034/1‑149 (MQ=255) | CGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTG‑‑CTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCTGGCCGGCGCGGTGCTTGAGCCAGGTG > NC_002947/2562399‑2562689 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |