New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2593638	30 (0.610)	3 (0.060)	3/240	NT	9.7%	coding (136/411 nt)	PP_5509	hypothetical protein
	?	NC_002947	= 2593675	28 (0.610)					coding (173/411 nt)	PP_5509	hypothetical protein

CTGGACTGAACCATGCGCAAGTTGATCTTCGCGGCCCTGGCCGTCCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGA  >  NC_002947/2593491‑2593785                                                                                                                                                    |                                                                                                                                                    cTGGACTGAACCATGCGCAAGTTGATCTTCGCGGCCCTGGCCGTCCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTAGAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCa                                                                                                                                                    <  5:199185/149‑1 (MQ=255)         aaCCATGCGCAAGTTGATCTTCGCGGCCCTGGCCGTCCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGccc                                                                                                                                            >  6:23209/1‑149 (MQ=255)         aaCCATGCGCAAGTTGATCTTCGCGGCCCTGGCCGTCCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGAGCAGGCCCCAGTAGTCGATGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGc                                                                                                                                              <  5:58257/147‑1 (MQ=255)                  cAAGTTGATCTTCGCGGCCCTGGCCGTCCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGc                                                                                                                                   <  5:308850/149‑1 (MQ=255)                    aGTTGATCTTCGCGGCCCTGGCCGTCCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCaa                                                                                                                                 <  5:112100/149‑1 (MQ=255)                      ttGATCTTCGCGGCCCTGGCCGTCCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGc                                                                                                                                   >  6:230837/1‑145 (MQ=255)                      ttGATCTTCGCGGCCCTGGCCGTCCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGc                                                                                                                                   <  5:230837/145‑1 (MQ=255)                      ttGATCTTCGCGGCCCTGGCCGTCCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAgc                                                                                                                               >  1:94996/1‑149 (MQ=255)                        gATCTTCGCGGCCCTGGCCGTCCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAgcg                                                                                                                              <  5:23209/148‑1 (MQ=255)                                       ggCCGTCCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCtggaccactggcgccgcttgcacgatcggggcagcctg                                                                                                               >  2:24457‑M1/1‑110 (MQ=255)                                             ccTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaact                                                                                                        <  1:177494‑M2/149‑9 (MQ=255)                                              cTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCtggaccactggcgccgcttgcacgatcggggcagcctggacaactg                                                                                                       <  4:93638‑M1/149‑47 (MQ=255)                                              cTTTCCCTGGCCGACTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCTAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaact                                                                                                        >  7:147592‑M2/1‑140 (MQ=255)                                                  cccTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCtggaccactggcgccgcttgcacgatcggggcagcctggacaactggag                                                                                                    <  1:24457‑M1/148‑50 (MQ=255)                                                       gccgcgTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCAt                                                                                              >  2:206942/1‑149 (MQ=255)                                                        ccgccTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATg                                                                                             <  2:94996/149‑1 (MQ=255)                                                             tgtgAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCAc                                                                                        >  5:38001/1‑149 (MQ=255)                                                                    gcCACTCCTGCTACCGCCCAGCCGTTGGGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGCCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGTCAACTCCAACGCCATGCTCACCGGCatg                                                                                 <  4:74554/149‑1 (MQ=255)                                                                     ccACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCCACGCCCTGCTCCCCGGCatg                                                                                 >  4:153211/1‑148 (MQ=255)                                                                     ccACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCatga                                                                                <  2:177494/149‑1 (MQ=255)                                                                        cTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCatgatga                                                                             <  3:153211/149‑1 (MQ=255)                                                                                    cccagccGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaa                                                                                                          >  7:129323‑M2/1‑102 (MQ=255)                                                                                    cccagccGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaa                                                                                                          <  8:129323‑M2/108‑7 (MQ=255)                                                                                     ccagccGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACAtttt                                                                >  2:242013/1‑149 (MQ=255)                                                                                      cagccGTTGTGCAGGCCCCAGTAGTAGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTg                                                               >  1:56469/1‑149 (MQ=255)                                                                                                                gAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCat                                                                                  <  2:285847/104‑1 (MQ=255)                                                                                                                gAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCat                                                                                  >  1:285847/1‑104 (MQ=255)                                                                                                                gAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCgg                                      <  1:206942/148‑1 (MQ=255)                                                                                                                        ggCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACAtttt                                                                >  6:305767/1‑114 (MQ=255)                                                                                                                        ggCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACAtttt                                                                <  5:305767/114‑1 (MQ=255)                                                                                                                         gCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGAGCTTCGGCATCGGCCCCGGCTGTCCATa                             >  5:11654/1‑148 (MQ=255)                                                                                                                           cccAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAaca                          >  1:191657/1‑149 (MQ=255)                                                                                                                              aGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTc                                 >  4:128066/1‑139 (MQ=255)                                                                                                                              aGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTc                                 <  3:128066/139‑1 (MQ=255)                                                                                                                                     gCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGt                >  5:155149/1‑149 (MQ=255)                                                                                                                                      ccGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGt                <  6:38001/148‑1 (MQ=255)                                                                                                                                         cTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaactggagcggcaaccactggggccggagcttcgactactggggcctgcacaacggctgggctgtagcaggagtggcgctcacaggcggccaggg             <  1:24457‑M2/148‑100 (MQ=255)                                                                                                                                            cAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaactggagcggcaaccactggggccggagcttcgactactggggcctgcacaacggctgggctgtagcaggagtggcgctcacaggcggccagggaaag         <  4:93638‑M2/149‑104 (MQ=255)                                                                                                                                            cAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCCCCGGCATGATGATGGGTCACATTTTGGGCa                                                           >  7:243853/1‑99 (MQ=255)                                                                                                                                            cAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCa                                                           <  8:243853/99‑1 (MQ=255)                                                                                                                                             aGTTGTCCtggaccactggcgccgcttgcacgatcggggcagcctggacaactggagcggcaaccactggggccggagcttcgactactggggcctgcacaacggctgggctgtagcaggagtggcgctcacaggcggccagggaaagg        <  1:177494‑M1/149‑142 (MQ=255)                                                                                                                                             aGTTGTCCtggaccactggcgccgcttgcacgatcggggcagcctggacaactggagcggcaaccactggggccggagcttagactactggggcctgcacaacggctgggctgtagcaggagtggcgctcacagtcggccagggaaag         >  7:147592‑M1/1‑8 (MQ=255)                                                                                                                                               ttGTCCtggaccactggcgccgcttgcacgatcggggcagcctggacaactggagcggcaaccactggggccggagcttcgactactggggcctgcacaacggctggg                                               >  7:129323‑M1/1‑6 (MQ=255)                                                                                                                                               ttGTCCtggaccactggcgccgcttgcacgatcggggcagcctggacaactggagcggcaaccactggggccggagcttcgactactggggcctgcacaacggctggg                                               <  8:129323‑M1/108‑103 (MQ=255)                                                                                                                                                  tCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGCCTGTCGCTAACACCACCATCGTGAACAACACCACg   >  8:258607/1‑149 (MQ=255)                                                                                                                                                    cAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaactggagcggcaaccactggggccggagcttcgactactggggcctgcacaacggctgggctgtagcaggagtggcgctcacaggcggccagggaaaggacggcc  >  2:24457‑M2/1‑38 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CTGGACTGAACCATGCGCAAGTTGATCTTCGCGGCCCTGGCCGTCCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGA  >  NC_002947/2593491‑2593785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.