New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2593638	30 (0.610)	3 (0.060)	3/240	NT	9.7%	coding (136/411 nt)	PP_5509	hypothetical protein
	?	NC_002947	= 2593675	28 (0.610)					coding (173/411 nt)	PP_5509	hypothetical protein

CCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCG  >  NC_002947/2593535‑2593820                                                                                                                                             |                                                                                                                                                  ccTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaact                                                                                                                                           <  1:177494‑M2/149‑9 (MQ=255)  cTTTCCCTGGCCGACTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCTAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaact                                                                                                                                           >  7:147592‑M2/1‑140 (MQ=255)           gccgcgTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCAt                                                                                                                                 >  2:206942/1‑149 (MQ=255)            ccgccTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATg                                                                                                                                <  2:94996/149‑1 (MQ=255)                 tgtgAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCAc                                                                                                                           >  5:38001/1‑149 (MQ=255)                        gcCACTCCTGCTACCGCCCAGCCGTTGGGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGCCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGTCAACTCCAACGCCATGCTCACCGGCatg                                                                                                                    <  4:74554/149‑1 (MQ=255)                         ccACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCCACGCCCTGCTCCCCGGCatg                                                                                                                    >  4:153211/1‑148 (MQ=255)                         ccACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCatga                                                                                                                   <  2:177494/149‑1 (MQ=255)                            cTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCatgatga                                                                                                                <  3:153211/149‑1 (MQ=255)                                        cccagccGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaa                                                                                                                                             >  7:129323‑M2/1‑102 (MQ=255)                                        cccagccGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaa                                                                                                                                             <  8:129323‑M2/108‑7 (MQ=255)                                         ccagccGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACAtttt                                                                                                   >  2:242013/1‑149 (MQ=255)                                          cagccGTTGTGCAGGCCCCAGTAGTAGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTg                                                                                                  >  1:56469/1‑149 (MQ=255)                                                                    gAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCat                                                                                                                     >  1:285847/1‑104 (MQ=255)                                                                    gAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCat                                                                                                                     <  2:285847/104‑1 (MQ=255)                                                                    gAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCgg                                                                         <  1:206942/148‑1 (MQ=255)                                                                            ggCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACAtttt                                                                                                   >  6:305767/1‑114 (MQ=255)                                                                            ggCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACAtttt                                                                                                   <  5:305767/114‑1 (MQ=255)                                                                             gCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGAGCTTCGGCATCGGCCCCGGCTGTCCATa                                                                >  5:11654/1‑148 (MQ=255)                                                                               cccAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAaca                                                             >  1:191657/1‑149 (MQ=255)                                                                                  aGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTc                                                                    >  4:128066/1‑139 (MQ=255)                                                                                  aGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTc                                                                    <  3:128066/139‑1 (MQ=255)                                                                                         gCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGt                                                   >  5:155149/1‑149 (MQ=255)                                                                                          ccGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGt                                                   <  6:38001/148‑1 (MQ=255)                                                                                             cTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaactggagcggcaaccactggggccggagcttcgactactggggcctgcacaacggctgggctgtagcaggagtggcgctcacaggcggccaggg                                                <  1:24457‑M2/148‑100 (MQ=255)                                                                                                cAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaactggagcggcaaccactggggccggagcttcgactactggggcctgcacaacggctgggctgtagcaggagtggcgctcacaggcggccagggaaag                                            <  4:93638‑M2/149‑104 (MQ=255)                                                                                                cAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCCCCGGCATGATGATGGGTCACATTTTGGGCa                                                                                              >  7:243853/1‑99 (MQ=255)                                                                                                cAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCa                                                                                              <  8:243853/99‑1 (MQ=255)                                                                                                      tCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGCCTGTCGCTAACACCACCATCGTGAACAACACCACg                                      >  8:258607/1‑149 (MQ=255)                                                                                                        cAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAggacaactggagcggcaaccactggggccggagcttcgactactggggcctgcacaacggctgggctgtagcaggagtggcgctcacaggcggccagggaaaggacggcc                                     >  2:24457‑M2/1‑38 (MQ=255)                                                                                                               ccccGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACAcc                             >  3:256286/1‑149 (MQ=255)                                                                                                                cccGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATc                                                     >  2:4402/1‑124 (MQ=255)                                                                                                                cccGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATc                                                     <  1:4402/124‑1 (MQ=255)                                                                                                                cccGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACAccc                            >  7:234652/1‑149 (MQ=255)                                                                                                                        tGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGac                     >  6:140261/1‑148 (MQ=255)                                                                                                                                          tCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGCGCGACCACCGTGGCTCCGCGTCCg  >  7:236432/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                  CCTTTCCCTGGCCGCCTGTGAGCGCCACTCCTGCTACAGCCCAGCCGTTGTGCAGGCCCCAGTAGTCGAAGCTCCGGCCCCAGTGGTTGCCGCTCCAGTTGTCCAGGCTGCCCCGATCGTGCAAGCGGCGCCAGTGGTCCAGGACAACTCCAACGCCATGCTCACCGGCATGATGATGGGTCACATTTTGGGCAGTGCTTCGGCATCGGCCCCGGCTGTCCATAACACCACCATCGTGAACAACACCACGACCAACACCCGAGCGACCACCGTGGCTCCGCGTCCG  >  NC_002947/2593535‑2593820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.