New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2704862 =	37 (0.750)	4 (0.080)	4/246	NT	11.3%	coding (2019/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein
	?	NC_002947	2704882 =	27 (0.570)					coding (2039/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein

TCGAGGAGGTCTTCAACGAGCGACAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGCCTGATCGATGCCATCGCC  >  NC_002947/2704717‑2705009                                                                                                                                                  |                                                                                                                                                    accccagccgaccaaggggcgatggcatcgatcaggcccagcgcgagcttaccggtatcgtcattttctgcggcggcctggcgcaaccctgcgcaggcacggtctatccggctgtcgcgtattgcccagcgggcacgctccgccaAGGc                                                                                                                                                  <  1:11709‑M1/4‑1 (MQ=255)   cccagccgaccaaggggcgatggcatcgatcaggcccagcgcgagcttaccggtatcgtcattttctgcggcggcctggcgcaaccctgcgcaggcacggtctatccggctgtcgcgtattgcccagcgggcacgctccgccaAGGc                                                                                                                                                  <  7:36827‑M1/4‑1 (MQ=255)     ggaggTCTTCAACGAGCGACAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCggg                                                                                                                                              <  2:295029/149‑1 (MQ=255)            ttCAACGAGCGACAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCt                                                                                                                                       >  8:236687/1‑149 (MQ=255)              cAACGAGCGACAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTg                                                                                                                                      <  7:236687/148‑1 (MQ=255)               aaCGAGCGACAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTgg                                                                                                                                     <  8:216356/148‑1 (MQ=255)                aCGAGCGACAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGcc                                                                                                                                   >  2:74225/1‑149 (MQ=255)                    cgatggcatcgatcaggcccagcgcgagcttaccggtatcgtcattttctgcggcggcctggcgcaaccctgcgcaggcacggtctatccggctgtcgcgtattgcccagcgggcacgctccgccaAGGCCGGGTACCCCTGGCCTTgg                                                                                                                               <  1:258333‑M1/23‑1 (MQ=255)                        cAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTgg                                                                                                                                     >  5:323413/1‑139 (MQ=255)                        cAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTgg                                                                                                                                     <  6:323413/139‑1 (MQ=255)                        cAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCg                                                                                                                             >  1:297535/1‑147 (MQ=255)                        cAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGa                                                                                                                           <  3:238134/149‑1 (MQ=255)                           aTCAGCCCGGTAGCAGCGGACCGAGTATTGATGCGGTACTTCCCAGGCCTTTCCCACGGCTGCGGACGTGAAATAGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGTCGGa                                                                                                                           <  6:241915/146‑1 (MQ=255)                           aTCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGCGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGAAGGACGGGTACCCCTGGCCTTGGCGGa                                                                                                                           >  5:241915/1‑146 (MQ=255)                                   gCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCt                                                                                                                >  2:317999/1‑149 (MQ=255)                                     aaGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCgg                                                                                                                                               >  8:131801/1‑116 (MQ=255)                                     aaGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCgg                                                                                                                                               <  7:131801/116‑1 (MQ=255)                                      agcagcGGACCGCGTATTGATGCGGGACTTCCCAGGCCGTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGCCGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTggg                                                                                                             <  3:243564/149‑1 (MQ=255)                                      agcagcGGACCGCGTATTGATGCGGGACGTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAAGCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTggg                                                                                                             <  3:247856/149‑1 (MQ=255)                                         agcGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCgg                                                                                                                                               <  6:325863/112‑1 (MQ=255)                                         agcGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCgg                                                                                                                                               >  5:325863/1‑112 (MQ=255)                                         agcGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCaa                                                                                                          >  5:141204/1‑149 (MQ=255)                                          gcGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAAt                                                                                                         <  2:55789/149‑1 (MQ=255)                                                      ttGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCg                                                                                             <  6:209712/149‑1 (MQ=255)                                                       tGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCg                                                                                             <  6:214400/148‑1 (MQ=255)                                                                  ttCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAAt                                                                                                         <  3:251758/125‑1 (MQ=255)                                                                  ttCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAAt                                                                                                         >  4:251758/1‑125 (MQ=255)                                                                  ttCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGc                                                                                 >  7:65971/1‑149 (MQ=255)                                                                     ccAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTg                                                                              >  2:280415/1‑149 (MQ=255)                                                                         gCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTgcg                                                                            >  7:255814/1‑147 (MQ=255)                                                                              ctggcgcaaccctgcgcaggcacggtctatccggctgtcgcgtattgcccagcgggcacgctccgccaAGGCCGGGTACCCCTGGCCTTGGc                                                                                                                              <  7:121778‑M1/24‑1 (MQ=255)                                                                              ctggcgcaaccctgcgcaggcacggtctatccggctgtcgcgtattgcccagcgggcacgctccgccaAGGCCGGGTACCCCTGGCCTTGGc                                                                                                                              >  8:121778‑M1/69‑92 (MQ=255)                                                                                ccACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTgc                                                                   <  8:255814/149‑1 (MQ=255)                                                                                  aCCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTgcgc                                                                 <  8:65971/149‑1 (MQ=255)                                                                                      cTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAgg                                                             <  1:280415/149‑1 (MQ=255)                                                                                                   aTCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGaaaa                                                <  4:116080/149‑1 (MQ=255)                                                                                                    tcgtcgAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAAt                                               <  1:74225/149‑1 (MQ=255)                                                                                                       tcgAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGAc                                            >  8:36827/1‑149 (MQ=255)                                                                                                                          cGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTc                             >  5:208032/1‑145 (MQ=255)                                                                                                                          cGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTc                             <  6:208032/145‑1 (MQ=255)                                                                                                                             gaTGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTgg                      <  1:317999/149‑1 (MQ=255)                                                                                                                             cccagcgggcacgctccgccaAGGCCAGGGGTACCCGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTgg                      <  2:258333‑M1/128‑1 (MQ=255)                                                                                                                                ggAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGcc                   >  3:138334/1‑149 (MQ=255)                                                                                                                                                 cAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGCCTGATCGATGCCATCGcc  >  6:42890/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    TCGAGGAGGTCTTCAACGAGCGACAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGCCTGATCGATGCCATCGCC  >  NC_002947/2704717‑2705009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.