New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2704862 =	37 (0.750)	4 (0.080)	4/246	NT	11.3%	coding (2019/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein
	?	NC_002947	2704882 =	27 (0.570)					coding (2039/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein

GCGACAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGCCTGATCGATGCCATCGCCCCTTGGTCGGCTGGGGT  >  NC_002947/2704736‑2705026                                                                                                                                                   |                                                                                                                                                 cgatggcatcgatcaggcccagcgcgagcttaccggtatcgtcattttctgcggcggcctggcgcaaccctgcgcaggcacggtctatccggctgtcgcgtattgcccagcgggcacgctccgccaAGGCCGGGTACCCCTGGCCTTgg                                                                                                                                                <  1:258333‑M1/23‑1 (MQ=255)     cAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCg                                                                                                                                              >  1:297535/1‑147 (MQ=255)     cAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGa                                                                                                                                            <  3:238134/149‑1 (MQ=255)        aTCAGCCCGGTAGCAGCGGACCGAGTATTGATGCGGTACTTCCCAGGCCTTTCCCACGGCTGCGGACGTGAAATAGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGTCGGa                                                                                                                                            <  6:241915/146‑1 (MQ=255)        aTCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGCGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGAAGGACGGGTACCCCTGGCCTTGGCGGa                                                                                                                                            >  5:241915/1‑146 (MQ=255)                gCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCt                                                                                                                                 >  2:317999/1‑149 (MQ=255)                   ccagcgcgagcttaccggtatcgtcattttctgcggcggcctggcgcaaccctgcgcaggcacggtctatccggctgtcgcgtattgcccagcgggcacgctccgccaaggccgggtacccctggcctTGGCGGAGCGTGCCCGCTggg                                                                                                                              <  2:258333‑M2/21‑1 (MQ=255)                   agcagcGGACCGCGTATTGATGCGGGACTTCCCAGGCCGTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGCCGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTggg                                                                                                                              <  3:243564/149‑1 (MQ=255)                   agcagcGGACCGCGTATTGATGCGGGACGTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAAGCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTggg                                                                                                                              <  3:247856/149‑1 (MQ=255)                      agcGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCaa                                                                                                                           >  5:141204/1‑149 (MQ=255)                       gcGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAAt                                                                                                                          <  2:55789/149‑1 (MQ=255)                                   ttGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCg                                                                                                              <  6:209712/149‑1 (MQ=255)                                    tGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCg                                                                                                              <  6:214400/148‑1 (MQ=255)                                               ttCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAAt                                                                                                                          >  4:251758/1‑125 (MQ=255)                                               ttCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAAt                                                                                                                          <  3:251758/125‑1 (MQ=255)                                               ttCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGc                                                                                                  >  7:65971/1‑149 (MQ=255)                                                  ccAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTg                                                                                               >  2:280415/1‑149 (MQ=255)                                                      gCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTgcg                                                                                             >  7:255814/1‑147 (MQ=255)                                                           ctggcgcaaccctgcgcaggcacggtctatccggctgtcgcgtattgcccagcgggcacgctccgccaAGGCCGGGTACCCCTGGCCTTGGc                                                                                                                                               >  8:121778‑M1/69‑92 (MQ=255)                                                           ctggcgcaaccctgcgcaggcacggtctatccggctgtcgcgtattgcccagcgggcacgctccgccaAGGCCGGGTACCCCTGGCCTTGGc                                                                                                                                               <  7:121778‑M1/24‑1 (MQ=255)                                                             ccACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTgc                                                                                    <  8:255814/149‑1 (MQ=255)                                                               aCCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTgcgc                                                                                  <  8:65971/149‑1 (MQ=255)                                                                   cTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAgg                                                                              <  1:280415/149‑1 (MQ=255)                                                                                aTCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGaaaa                                                                 <  4:116080/149‑1 (MQ=255)                                                                                 tcgtcgAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAAt                                                                <  1:74225/149‑1 (MQ=255)                                                                                    tcgAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGAc                                                             >  8:36827/1‑149 (MQ=255)                                                                                                       cGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTc                                              <  6:208032/145‑1 (MQ=255)                                                                                                       cGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTc                                              >  5:208032/1‑145 (MQ=255)                                                                                                          gaTGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTgg                                       <  1:317999/149‑1 (MQ=255)                                                                                                          cccagcgggcacgctccgccaAGGCCAGGGGTACCCGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTgg                                       <  2:258333‑M1/128‑1 (MQ=255)                                                                                                             ggAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGcc                                    >  3:138334/1‑149 (MQ=255)                                                                                                                           gccaaggccaggggtacccggcctTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAg                                                                               <  7:121778‑M2/68‑1 (MQ=255)                                                                                                                           gccaaggccaggggtacccggcctTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAg                                                                               >  8:121778‑M2/25‑92 (MQ=255)                                                                                                                            ccaaggccaggggtacccggcctTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGCCTGATCGATGCCATCg                     <  1:258333‑M2/126‑1 (MQ=255)                                                                                                                              cAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGCCTGATCGATGCCATCGcc                   >  6:42890/1‑149 (MQ=255)                                                                                                                                      gTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGCCTGATCGATGCCATCGCCCCTTGGTc           <  5:42890/149‑1 (MQ=255)                                                                                                                                          cccTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCTGTAAGCTCGCGCTGGGCCTGATCGATGCCAt                       <  4:177395/133‑1 (MQ=255)                                                                                                                                          cccTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGCCTGATCGATGCCAt                       >  3:177395/1‑133 (MQ=255)                                                                                                                                               gcctTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGCCTGATCGATGCCATCGCCCCTTGGTCGGCTggg    <  7:36827‑M2/143‑1 (MQ=255)                                                                                                                                               gcctTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGCCTGATCGATGCCATCGCCCCTTGGTCGGCTGGGGt  <  1:11709‑M2/145‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 GCGACAGATCAGCCCGCAAGCAGCGGACCGCGTATTGATGCGGGACTTCCCAGGCCTTTCCCACCGCTGCGCACGGGAAATCGTCGAGGGGGCCAGCAGCATCGAGATGGAGAGCCTGACGGGTGCAGGCCGGGTACCCCTGGCCTTGGCGGAGCGTGCCCGCTGGGCAATACGCGACAGCCGGATAGACCGTGCCTGCGCAGGGTTGCGCCAGGCCGCCGCAGAAAATGACGATACCGGTAAGCTCGCGCTGGGCCTGATCGATGCCATCGCCCCTTGGTCGGCTGGGGT  >  NC_002947/2704736‑2705026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.