New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2705526	42 (0.850)	4 (0.090)	3/244	NT	10.5%	coding (2683/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2705600	28 (0.600)					coding (2757/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein

GCGGGGAGTGGACCCCTGGAACCATGTGAGCCAACTGCTACAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGA  >  NC_002947/2705378‑2705670                                                                                                                                                      |                                                                                                                                                  gCGGGGAGTGGACCCCTGGAACCATGTGAGCCAACTGCTACAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCATGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAA                                                                                                                                                   <  2:234967‑M1/149‑1 (MQ=255)              cccTGGAACCATGTGAGCCAACTGCTACAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGTCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCa                                                                                                                                            <  1:118714/143‑1 (MQ=255)              cccTGGAACCATGTGAGCCAACTGCTACAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGTCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCa                                                                                                                                            >  2:118714/1‑143 (MQ=255)                   gAACCATGTGAGCCAACTGCTACAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTAccc                                                                                                                                 >  7:139944/1‑149 (MQ=255)                   gAACCATGTGAGCCAACTGCTACAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTAc                                                                                                                                   <  5:159720/147‑1 (MQ=255)                           tgAGCCAACTGCTACAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAg                                                                                                                        <  1:7719/149‑1 (MQ=255)                              gCCAACTGCTACAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCTGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTg                                                                                                                     <  7:31194/149‑1 (MQ=255)                                 aaCTGCTACAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCg                                                                                                                  >  6:255489/1‑149 (MQ=255)                                      cTACAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGt                                                                                                               <  4:43639/147‑1 (MQ=255)                                         cAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACt                                                                                                           <  2:149586/148‑1 (MQ=255)                                         cAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTa                                                                                                          >  1:186041/1‑149 (MQ=255)                                          aGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTac                                                                                                         <  5:100568/149‑1 (MQ=255)                                           ggCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTac                                                                                                         >  2:27747/1‑148 (MQ=255)                                            gCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGCCTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTacca                                                                                                       >  1:268665/1‑149 (MQ=255)                                             ccAAGGGCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGGTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTaccac                                                                                                      <  2:233858/149‑1 (MQ=255)                                                     aGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGt                                                                                                               <  7:9122/132‑1 (MQ=255)                                                     aGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGt                                                                                                               >  8:9122/1‑132 (MQ=255)                                                        cTCAAGCAGGCATTGCAAGCCTCGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGt                                                                                           <  3:85969/149‑1 (MQ=255)                                                         tCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTg                                                                                          >  2:70099/1‑149 (MQ=255)                                                           aaGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTgg                                                                                         <  8:139944/148‑1 (MQ=255)                                                             gCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGt                                                                                       >  1:316080/1‑148 (MQ=255)                                                                ggCATTGCAAGCCTGGCGAAATGTCGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGc                                                                                   <  7:269514/149‑1 (MQ=255)                                                                 gCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCg                                                                                  >  8:186341/1‑149 (MQ=255)                                                                   aTTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCggg                                                                                >  7:125338/1‑149 (MQ=255)                                                                    ttGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCgggt                                                                               <  2:316080/149‑1 (MQ=255)                                                                      gCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGGTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCACGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCgggt                                                                               <  1:70099/148‑1 (MQ=255)                                                                       cAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTAc                                                                                                                                   <  3:264649/95‑1 (MQ=255)                                                                       cAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTAc                                                                                                                                   >  4:264649/1‑95 (MQ=255)                                                                          gCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCGAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGa                                                                         <  2:130259/149‑1 (MQ=255)                                                                            cTGGCGAAATGACGCAGGACTGAACATTGTGTCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAActcacccacccgctcacccacgagggtcaggtggtagtcacccgccacctcccctggggtaaagcgctgccagc                                                                         >  1:28368‑M1/1‑75 (MQ=255)                                                                               gCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGttgc                                                                    <  7:257213‑M2/149‑5 (MQ=255)                                                                                  aaaTGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGa                                                                 <  8:257213/149‑1 (MQ=255)                                                                                       aCGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAActcacccacccgctcacccacgagggtcaggtggtagtcacccgccacctcccctggggtaaagcgctgccagcttgccgtaatg                                                              <  2:28368‑M1/148‑86 (MQ=255)                                                                                         gCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGcc                                                          >  7:181026/1‑149 (MQ=255)                                                                                             gACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGa                                                       >  3:310408/1‑148 (MQ=255)                                                                                                tGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAActcacccacccgctcacccacgagggtcaggtggtagtcacccgccacctcccctggggtaaagcgctgccagcttgccgtaatg                                                              >  1:220683‑M1/1‑54 (MQ=255)                                                                                                tGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAActcacccacccgctcacccacgagggtcaggtggtagtcacccgccacctcccctggggtaaagcgctgccagcttgccgtaatg                                                              <  2:220683‑M1/139‑86 (MQ=255)                                                                                                   aCATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAAtgtg                                                <  8:125338/149‑1 (MQ=255)                                                                                                   aCATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAAtgt                                                 >  1:44757/1‑148 (MQ=255)                                                                                                         t‑tCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTc                                          <  2:44757/149‑1 (MQ=255)                                                                                                              ccgccTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGAcc                                      <  2:186041/149‑1 (MQ=255)                                                                                                                    gCGTCGTTACAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGCCAATGTGAGTTTCGACCACATCa                                >  3:192813/1‑149 (MQ=255)                                                                                                                      gtcgtTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACg                              <  7:186341/149‑1 (MQ=255)                                                                                                                                         gcgcATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGata           <  5:255489/149‑1 (MQ=255)                                                                                                                                         gcgcATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGGGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGata           <  4:192813/149‑1 (MQ=255)                                                                                                                                            cATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGttgccgtaatgcgcctggcaaccttgaaacgacgcaggcggcgaacaatgttcagtcctgcgt         <  2:28368‑M2/148‑64 (MQ=255)                                                                                                                                            cATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGttgccgtaatgcgcctggcaaccttgaaacgacgcaggcggcgaacaatgttca                  >  1:220683‑M2/1‑85 (MQ=255)                                                                                                                                            cATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGttgccgtaatgcgcctggcaaccttgaaacgacgcaggcggcgaacaatgttca                  <  2:220683‑M2/139‑55 (MQ=255)                                                                                                                                             aTTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATg         >  5:251716/1‑147 (MQ=255)                                                                                                                                             aTTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATg         >  4:83061/1‑147 (MQ=255)                                                                                                                                             aTTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCa       <  8:181026/149‑1 (MQ=255)                                                                                                                                                   gCAActcacccacccgctcacccacgagggtcaggtggtagtcacccgccacctcccctggggtaaagcgctgccagcttgccgtaatgcgcctggcaaccttgaaacgacgcaggcggcgaacaatgttcagtcctgcgtcatttcgc  <  7:257213‑M1/149‑146 (MQ=255)                                                                                                                                                      |                                                                                                                                                  GCGGGGAGTGGACCCCTGGAACCATGTGAGCCAACTGCTACAGGCCAAGGTCAGCCTCAAGCAGGCATTGCAAGCCTGGCGAAATGACGCAGGACTGAACATTGT‑TCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCA‑GGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGA  >  NC_002947/2705378‑2705670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.