New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2705526	42 (0.850)	4 (0.090)	3/244	NT	10.5%	coding (2683/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2705600	28 (0.600)					coding (2757/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein

GCGAAATGACGCAGGACTGAACATTGTTCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCTTGGTCGCTTCAGCAAGGTACGCAACCTGGACTTGCGGAACAACCAG  >  NC_002947/2705456‑2705738                                                                                                                                                 |                                                                                                                                           gCGAAATGACGCAGGACTGAACATTGTTCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGttgc                                                                                                                                        <  7:257213‑M2/149‑5 (MQ=255)    aaaTGACGCAGGACTGAACATTGTTCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGa                                                                                                                                     <  8:257213/149‑1 (MQ=255)           gCAGGACTGAACATTGTTCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGcc                                                                                                                              >  7:181026/1‑149 (MQ=255)               gACTGAACATTGTTCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGa                                                                                                                           >  3:310408/1‑148 (MQ=255)                     aCATTGTTCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAAtgtg                                                                                                                    <  8:125338/149‑1 (MQ=255)                     aCATTGTTCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAAtgt                                                                                                                     >  1:44757/1‑148 (MQ=255)                           ttCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTc                                                                                                              <  2:44757/149‑1 (MQ=255)                               ccgccTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGAcc                                                                                                          <  2:186041/149‑1 (MQ=255)                                     gCGTCGTTACAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGCCAATGTGAGTTTCGACCACATCa                                                                                                    >  3:192813/1‑149 (MQ=255)                                       gtcgtTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACg                                                                                                  <  7:186341/149‑1 (MQ=255)                                                          gcgcATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGata                                                                               <  5:255489/149‑1 (MQ=255)                                                          gcgcATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGGGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGata                                                                               <  4:192813/149‑1 (MQ=255)                                                             cATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGttgccgtaatgcgcctggcaaccttgaaacgacgcaggcggcgaacaatgttcagtcctgcgt                                                                             <  2:28368‑M2/148‑64 (MQ=255)                                                             cATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGttgccgtaatgcgcctggcaaccttgaaacgacgcaggcggcgaacaatgttca                                                                                      >  1:220683‑M2/1‑85 (MQ=255)                                                             cATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGttgccgtaatgcgcctggcaaccttgaaacgacgcaggcggcgaacaatgttca                                                                                      <  2:220683‑M2/139‑55 (MQ=255)                                                              aTTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATg                                                                             >  4:83061/1‑147 (MQ=255)                                                              aTTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATg                                                                             >  5:251716/1‑147 (MQ=255)                                                              aTTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCa                                                                           <  8:181026/149‑1 (MQ=255)                                                                        gCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGttgccgtaatgcgcctggcaaccttgaaacgacgcaggcggcgacacaatgttcagtcctgcgtcatttcgccag                                                                 >  1:28368‑M2/1‑74 (MQ=255)                                                                            gCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTCACCCTGCGCGATATGCAGGTGACGAGCCtt                                                              <  1:27747/148‑1 (MQ=255)                                                                                        cccAGGGGAGGTGGCGGGTGACTACCACCTGAAACTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTAGACCACATCACGCAACTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGTCTTTc                                                 >  4:1131/1‑149 (MQ=255)                                                                                         ccAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCCTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCt                                                >  6:245317/1‑149 (MQ=255)                                                                                          cAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCtt                                               <  3:83061/149‑1 (MQ=255)                                                                                          cAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCtt                                               >  1:69217/1‑149 (MQ=255)                                                                                           aGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCTTg                                              >  3:224458/1‑149 (MQ=255)                                                                                                       gggTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCTTgg                                             <  8:102750/138‑1 (MQ=255)                                                                                                       gggTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCTTgg                                             >  7:102750/1‑138 (MQ=255)                                                                                                                ccaccTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTc                                                 >  3:262310/1‑125 (MQ=255)                                                                                                                ccaccTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTc                                                 <  4:262310/125‑1 (MQ=255)                                                                                                                  accTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCTTGGTCGCTTCAGCAAGGTACGCAAc                       >  6:276449/1‑149 (MQ=255)                                                                                                                        cccTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCTTGGTCGCTTCAGCAAGGTACGCAACCTGGAc                 <  4:310408/149‑1 (MQ=255)                                                                                                                         ccTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCTTGGTCGCTTCAGCAAGGTACGCAACCTGGACt                >  5:834/1‑149 (MQ=255)                                                                                                                             gTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCTTGGTCGCTTCAGCAAGGTACGCAACCTGGACTTGc             <  3:1131/148‑1 (MQ=255)                                                                                                                                       gggtgggtGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCTTGGTCGCTTCAGCAAGGTACGCAACCTGGACTTGCGGAACAACCAg  <  2:268665/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                           GCGAAATGACGCAGGACTGAACATTGTTCGCCGCCTGCGTCGTTTCAAGGTTGCCAGGCGCATTACGGCAAGCTGGCAGCGCTTTACCCCAGGGGAGGTGGCGGGTGACTACCACCTGACCCTCGTGGGTGAGCGGGTGGGTGAGTTGCCGACCTTGCCTGACAATGTGAGTTTCGACCACATCACGCACCTGACCCTGCGCGATATGCAGGTGACGAGCCTTGATGCAGGCTTTCTTGGTCGCTTCAGCAAGGTACGCAACCTGGACTTGCGGAACAACCAG  >  NC_002947/2705456‑2705738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.