New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2970432 =	45 (0.910)	4 (0.090)	4/242	NT	9.1%	coding (771/2391 nt)	PP_2599	chemotaxis sensory transducer family protein
	?	NC_002947	2970464 =	37 (0.790)					coding (803/2391 nt)	PP_2599	chemotaxis sensory transducer family protein

GGCTGTTGCGCGAGCAGGTTCAAGGCTTGGCCAGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGT  >  NC_002947/2970284‑2970576                                                                                                                                                     |                                                                                                                                                 ctttcatccactgccagctcgcttgggtagtgttcaccgcggcacgaggcggccaggcgcagcaaagcctgttcagcgtcgtacaggtaaaccccgccggcgtcgcctccggcagcttctaccagatggctcagcacgccatcgagcat                                                                                                                                                  >  5:317511‑M1/149‑149 (MQ=255)    tcatccactgccagctcgcttgggtagtgttcaccgcggcacgaggcggccaggcgcagcaaagcctgttcagcgtcgtacaggtaaaccccgccggcgtcgcctccggcagcttctaccagatggctcagcacgccatcgagcaTg                                                                                                                                                 >  1:211091‑M1/146‑147 (MQ=255)    tcatccactgccagctcgcttgggtagtgttcaccgcggcacgaggcggccaggcgcagcaaagcctgttcagcgtcgtacaggtaaaccccgccggcgtcgcctccggcagcttctaccagatggctcagcacgccatcgagcaTg                                                                                                                                                 >  2:149483‑M1/146‑147 (MQ=255)      ttGCGCGAGCAGGTTCAAGGCTTGGCCAGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCt                                                                                                                                             >  2:48820/1‑149 (MQ=255)            gAGCAGGTTCAAGGCTTGGCCAGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCcg                                                                                                                                       >  1:282594/1‑149 (MQ=255)                   ttCAAGGCTTGGCCAGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCgcgagcga                                                                                                                                <  3:197265/149‑1 (MQ=255)                    tCAAGGCTTGGCCAGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCgcgagc                                                                                                                                  >  7:214458/1‑146 (MQ=255)                              gCCAGCTTTGATTTCAGCCGTGAAGTGGGCGGGCACTCGCGGGTTTCCTCGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAgc                                                                                                                      <  1:293919/148‑1 (MQ=255)                               ccAGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAgcg                                                                                                                     >  6:227763/1‑148 (MQ=255)                                cAGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCa                                                                                                                   >  4:251393/1‑149 (MQ=255)                                 aGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCAt                                                                                                                  >  5:283183/1‑149 (MQ=255)                                 aGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGACGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCAt                                                                                                                  <  5:98651/149‑1 (MQ=255)                                  gCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCAAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATg                                                                                                                 >  1:66443/1‑149 (MQ=255)                                    accgcggcacgaggcggccaggcgcagcaaagcctgttcagcgtcgtacaggtaaaccccgccggcgtcgcctccggcagcttctaccagatggctcagcacgccatcgagcaTGCGCTc                                                                                                                                            >  4:199392‑M1/114‑120 (MQ=255)                                    accgcggcacgaggcggccaggcgcagcaaagcctgttcagcgtcgtacaggtaaaccccgccggcgtcgcctccggcagcttctaccagatggctcagcacgccatcgagcaTGCGCTc                                                                                                                                            <  3:199392‑M1/7‑1 (MQ=255)                                      tGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTc                                                                                                              <  1:48820/148‑1 (MQ=255)                                         tttCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATg                                                                                                          <  5:17255/149‑1 (MQ=255)                                          ttCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAgc                                                                                                                      >  4:181352/1‑136 (MQ=255)                                          ttCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAgc                                                                                                                      <  3:181352/136‑1 (MQ=255)                                             aGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGa                                                                                                                        >  7:151709/1‑131 (MQ=255)                                             aGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGa                                                                                                                        <  8:151709/131‑1 (MQ=255)                                                  tGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGa                                                                                                 <  5:15551/149‑1 (MQ=255)                                                   ggccaggcgcagcaaagcctgttcagcgtcgtacaggtaaaccccgccggcgtcgcctccggcagcttctaccagatggctcagcacgccatcgagcaTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATg                                                                                                                 >  5:251885‑M1/99‑132 (MQ=255)                                                   ggccaggcgcagcaaagcctgttcagcgtcgtacaggtaaaccccgccggcgtcgcctccggcagcttctaccagatggctcagcacgccatcgagcaTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATg                                                                                                                 <  6:251885‑M1/34‑1 (MQ=255)                                                     aGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGcc                                                                                              <  5:227763/149‑1 (MQ=255)                                                        gggCGTGCACTCGCGGGTTTCCGGGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATg                                                                                                          <  6:136666/134‑1 (MQ=255)                                                        gggCGTGCACTCGCGGGTTTCCGGGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATg                                                                                                          >  5:136666/1‑134 (MQ=255)                                                         gcgcagcaaagcctgttcagcgtcgtacaggtaaaccccgccggcgtcgcctccggcagcttctaccagatggctcagcacgccatcgagcaTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCa                                                                                                                   >  4:81561‑M1/93‑124 (MQ=255)                                                         gcgcagcaaagcctgttcagcgtcgtacaggtaaaccccgccggcgtcgcctccggcagcttctaccagatggctcagcacgccatcgagcaTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCa                                                                                                                   <  3:81561‑M1/32‑1 (MQ=255)                                                          gCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTg                                                                                         >  7:36315/1‑149 (MQ=255)                                                           cGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTgg                                                                                        <  4:112804/149‑1 (MQ=255)                                                            gTGCACTGGCGGTTTTCCGAGGTGCGCGAGTTGAGCCGCTTGCTGAGCCGCATGTCCTGTACTATTCGCAACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGt                                                                                       <  6:9331/149‑1 (MQ=255)                                                                  tCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGc                                                                                 >  6:191537/1‑149 (MQ=255)                                                                    gcgGGTTTCCGATGTGCCCGATTTGAGCCGGGTGCTGAGCCTCATGTCCGGTACTATTCGGCACTTTCAGGCGATTAGCGTTGCGGTCACCCGCGAGCGAGACCTGGAGCGCATGc                                                                                                                <  1:125372/116‑1 (MQ=255)                                                                    gcgGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTg                                                                               >  4:59151/1‑149 (MQ=255)                                                                           tCCGATGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAg                                                                         <  8:214458/148‑1 (MQ=255)                                                                                        aGTTGAGCCGCGTGCGTTGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCAGGTAGAAGCTGCCGGAGGCGACGCCGGCggg                                                           <  2:282594/149‑1 (MQ=255)                                                                                          ttGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTAGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGt                                                         <  6:283183/149‑1 (MQ=255)                                                                                             aGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGttt                                                       <  8:36315/148‑1 (MQ=255)                                                                                             aGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGttt                                                       <  3:251393/148‑1 (MQ=255)                                                                                                           ccGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGc                                                                                                        >  6:261282/1‑85 (MQ=255)                                                                                                           ccGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGc                                                                                                        <  5:261282/85‑1 (MQ=255)                                                                                                             gCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCt                                                                                          >  2:277410/1‑97 (MQ=255)                                                                                                             gCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCt                                                                                          <  1:277410/97‑1 (MQ=255)                                                                                                             gCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTac                                               >  2:267196/1‑140 (MQ=255)                                                                                                                  tCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATg                                                                                                          >  8:119878/1‑76 (MQ=255)                                                                                                                  tCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATg                                                                                                          <  7:119878/76‑1 (MQ=255)                                                                                                                            ttCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGTGTTTACCTGTACGACGCTGAACAGGCTTtgctgctc                       <  2:66443/149‑3 (MQ=255)                                                                                                                             tCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGcc                      >  1:312796/1‑149 (MQ=255)                                                                                                                               gCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTg                    >  6:187262/1‑149 (MQ=255)                                                                                                                                     ttCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGgccgcc              >  3:33758/1‑149 (MQ=255)                                                                                                                                          gCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTg         >  8:187635/1‑149 (MQ=255)                                                                                                                                            gATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGcc       >  2:16532/1‑149 (MQ=255)                                                                                                                                            gATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGcc       >  2:272455/1‑149 (MQ=255)                                                                                                                                                  ccTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAgg                                  >  6:32595/1‑116 (MQ=255)                                                                                                                                                  ccTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAgg                                  <  5:32595/116‑1 (MQ=255)                                                                                                                                                  ccTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGt  >  2:249108/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GGCTGTTGCGCGAGCAGGTTCAAGGCTTGGCCAGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGT  >  NC_002947/2970284‑2970576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.