New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2970432 =	45 (0.910)	4 (0.090)	4/242	NT	9.1%	coding (771/2391 nt)	PP_2599	chemotaxis sensory transducer family protein
	?	NC_002947	2970464 =	37 (0.790)					coding (803/2391 nt)	PP_2599	chemotaxis sensory transducer family protein

AGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGTGAACACTACCCAAGCGAGCTGGCAGTGGATGAAAG  >  NC_002947/2970316‑2970611                                                                                                                                                     |                                                                                                                                                    aGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCAt                                                                                                                                                     >  5:283183/1‑149 (MQ=255) aGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGACGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCAt                                                                                                                                                     <  5:98651/149‑1 (MQ=255)  gCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCAAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATg                                                                                                                                                    >  1:66443/1‑149 (MQ=255)      tGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTc                                                                                                                                                 <  1:48820/148‑1 (MQ=255)         tttCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATg                                                                                                                                             <  5:17255/149‑1 (MQ=255)                  tGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGa                                                                                                                                    <  5:15551/149‑1 (MQ=255)                   ggccaggcgcagcaaagcctgttcagcgtcgtacaggtaaaccccgccggcgtcgcctccggcagcttctaccagatggctcagcacgccatcgagcaTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATg                                                                                                                                                    <  6:251885‑M1/34‑1 (MQ=255)                   ggccaggcgcagcaaagcctgttcagcgtcgtacaggtaaaccccgccggcgtcgcctccggcagcttctaccagatggctcagcacgccatcgagcaTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATg                                                                                                                                                    >  5:251885‑M1/99‑132 (MQ=255)                     aGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGcc                                                                                                                                 <  5:227763/149‑1 (MQ=255)                        gggCGTGCACTCGCGGGTTTCCGGGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATg                                                                                                                                             >  5:136666/1‑134 (MQ=255)                        gggCGTGCACTCGCGGGTTTCCGGGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATg                                                                                                                                             <  6:136666/134‑1 (MQ=255)                          gCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTg                                                                                                                            >  7:36315/1‑149 (MQ=255)                           cGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTgg                                                                                                                           <  4:112804/149‑1 (MQ=255)                            gTGCACTGGCGGTTTTCCGAGGTGCGCGAGTTGAGCCGCTTGCTGAGCCGCATGTCCTGTACTATTCGCAACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGt                                                                                                                          <  6:9331/149‑1 (MQ=255)                                  tCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGc                                                                                                                    >  6:191537/1‑149 (MQ=255)                                    gcgGGTTTCCGATGTGCCCGATTTGAGCCGGGTGCTGAGCCTCATGTCCGGTACTATTCGGCACTTTCAGGCGATTAGCGTTGCGGTCACCCGCGAGCGAGACCTGGAGCGCATGc                                                                                                                                                   <  1:125372/116‑1 (MQ=255)                                    gcgGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTg                                                                                                                  >  4:59151/1‑149 (MQ=255)                                           tCCGATGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAg                                                                                                            <  8:214458/148‑1 (MQ=255)                                                        aGTTGAGCCGCGTGCGTTGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCAGGTAGAAGCTGCCGGAGGCGACGCCGGCggg                                                                                              <  2:282594/149‑1 (MQ=255)                                                          ttGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTAGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGt                                                                                            <  6:283183/149‑1 (MQ=255)                                                             aGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGttt                                                                                          <  8:36315/148‑1 (MQ=255)                                                             aGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGttt                                                                                          <  3:251393/148‑1 (MQ=255)                                                                           ccGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGc                                                                                                                                           >  6:261282/1‑85 (MQ=255)                                                                           ccGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGc                                                                                                                                           <  5:261282/85‑1 (MQ=255)                                                                             gCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCt                                                                                                                             <  1:277410/97‑1 (MQ=255)                                                                             gCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCt                                                                                                                             >  2:277410/1‑97 (MQ=255)                                                                             gCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTac                                                                                  >  2:267196/1‑140 (MQ=255)                                                                                  tCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATg                                                                                                                                             <  7:119878/76‑1 (MQ=255)                                                                                  tCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATg                                                                                                                                             >  8:119878/1‑76 (MQ=255)                                                                                            ttCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGTGTTTACCTGTACGACGCTGAACAGGCTTtgctgctc                                                          <  2:66443/149‑3 (MQ=255)                                                                                             tCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGcc                                                         >  1:312796/1‑149 (MQ=255)                                                                                               gCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTg                                                       >  6:187262/1‑149 (MQ=255)                                                                                                     ttCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGgccgcc                                                 >  3:33758/1‑149 (MQ=255)                                                                                                          gCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTg                                            >  8:187635/1‑149 (MQ=255)                                                                                                            gATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGcc                                          >  2:272455/1‑149 (MQ=255)                                                                                                            gATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGcc                                          >  2:16532/1‑149 (MQ=255)                                                                                                                  ccTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAgg                                                                     >  6:32595/1‑116 (MQ=255)                                                                                                                  ccTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAgg                                                                     <  5:32595/116‑1 (MQ=255)                                                                                                                  ccTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGt                                     >  2:249108/1‑148 (MQ=255)                                                                                                                   catgcgctccaggtctcgctcgcggctgagcgcaTGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGgcc                                                    >  5:251885‑M2/35‑132 (MQ=255)                                                                                                                   catgcgctccaggtctcgctcgcggctgagcgcaTGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGgcc                                                    <  6:251885‑M2/98‑1 (MQ=255)                                                                                                                     tgcgctccaggtctcgctcgcggctgagcgcaTGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTgcgc                                                          <  3:81561‑M2/92‑1 (MQ=255)                                                                                                                     tgcgctccaggtctcgctcgcggctgagcgcaTGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTgcgc                                                          >  4:81561‑M2/33‑124 (MQ=255)                                                                                                                       CGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGTGAaca                                >  5:191537‑M1/1‑148 (MQ=255)                                                                                                                              ccGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGTGAACACTACCCaa                        <  1:68546/149‑1 (MQ=255)                                                                                                                                gcgagcgaGACCTGGAGCGCATGCTAGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGACTGGCCGCCTCGTGCCGCGGTGAACACTACCCAAGc                      >  8:284295/1‑149 (MQ=255)                                                                                                                                    gcgagACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCTGTGAACACTACCCAAGCGAGc                  <  5:187262/149‑1 (MQ=255)                                                                                                                                      gagaCCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGTGAACACTACCCAAGCGAGCTg                >  6:8640/1‑149 (MQ=255)                                                                                                                                      gagaCCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGTGAACACTACCCAAGCGAGCTg                <  7:187635/149‑1 (MQ=255)                                                                                                                                           cTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTgg                                                      >  4:91097/1‑106 (MQ=255)                                                                                                                                           cTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTgg                                                      <  3:91097/106‑1 (MQ=255)                                                                                                                                              gagcgcaTGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGt                                     >  4:199392‑M2/8‑120 (MQ=255)                                                                                                                                              gagcgcaTGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGt                                     <  3:199392‑M2/113‑1 (MQ=255)                                                                                                                                                   caTGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGTGAACACTACCCAAGCGAGCTGGCAGTGGATGa     >  2:149483‑M2/3‑147 (MQ=255)                                                                                                                                                   caTGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGTGAACACTACCCAAGCGAGCTGGCAGTGGATGa     >  1:211091‑M2/3‑147 (MQ=255)                                                                                                                                                    aTGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGTGAACACTACCCAAGCGAGCTGGCAGTGGATGAAAg  >  5:317511‑M2/2‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AGCTTTGATTTCAGCCGTGAAGTGGGCGTGCACTCGCGGGTTTCCGAGGTGCGCGAGTTGAGCCGCGTGCTGAGCCGCATGTCCGGTACTATTCGCCACTTTCAGGCGATTACCCTTGCGCTCAGCCGCGAGCGAGACCTGGAGCGCATGCTCGATGGCGTGCTGAGCCATCTGGTAGAAGCTGCCGGAGGCGACGCCGGCGGGGTTTACCTGTACGACGCTGAACAGGCTTTGCTGCGCCTGGCCGCCTCGTGCCGCGGTGAACACTACCCAAGCGAGCTGGCAGTGGATGAAAG  >  NC_002947/2970316‑2970611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.