New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3102530 | 40 (0.810) | 4 (0.090) | 4/238 | NT | 9.4% | coding (361/642 nt) | PP_2712 | hypothetical protein |
? | NC_002947 | = 3102550 | 40 (0.870) | coding (381/642 nt) | PP_2712 | hypothetical protein |
TGGGAGGGCATCATCAACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCG > NC_002947/3102386‑3102678 | tGGGAGGGCATCATCAACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCAc > 7:52743/1‑149 (MQ=255) atcaACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGAcc < 8:150456/148‑1 (MQ=255) tcaACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAg > 4:1390/1‑149 (MQ=255) aaCAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑Gt < 7:262800/149‑1 (MQ=255) aaCAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑Gt > 1:79940/1‑149 (MQ=255) agcagTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGcc > 2:5763‑M2/1‑147 (MQ=255) gggCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGccaggctg > 3:146176‑M2/1‑140 (MQ=255) ggCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGccaggctgg > 2:135667‑M2/1‑139 (MQ=255) gCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCACGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGc < 1:94575/149‑1 (MQ=255) gCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGcca > 1:161911‑M2/1‑122 (MQ=255) gCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGcca < 2:161911‑M2/125‑4 (MQ=255) cTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGcacctggtcatacagcgtgcccaggc < 3:39747‑M1/126‑27 (MQ=255) cTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGcacctggtcatacagcgtgcccaggc > 4:39747‑M1/1‑100 (MQ=255) cTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGt > 5:73255/1‑109 (MQ=255) cTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGt < 6:73255/109‑1 (MQ=255) cTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGc > 4:166191/1‑149 (MQ=255) cTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACACCGC‑CGCCCTGCAAAGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGAGATGc > 7:203226/1‑149 (MQ=255) aaGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGAc > 4:142191/1‑147 (MQ=255) gcggcgAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGa < 8:58779/142‑1 (MQ=255) gcggcgAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGa > 7:58779/1‑142 (MQ=255) gAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGcacctggtcatacagcgtgccca > 8:62515‑M1/1‑71 (MQ=255) gAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGcacctggtcatacagcgtgccca < 7:62515‑M1/94‑24 (MQ=255) gAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTc < 8:148518/112‑1 (MQ=255) gAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTc > 7:148518/1‑112 (MQ=255) aaaGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGc > 6:114084/1‑149 (MQ=255) gCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCtt > 4:134322/1‑149 (MQ=255) cTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTg > 5:132673/1‑149 (MQ=255) gCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCa < 3:166191/148‑1 (MQ=255) gAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATc < 6:82686/147‑1 (MQ=255) aGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAAc > 3:36470/1‑149 (MQ=255) gCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGc < 3:176346/140‑1 (MQ=255) gCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGc > 4:176346/1‑140 (MQ=255) cAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAAccc > 1:124248/1‑149 (MQ=255) ccATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAAc < 2:79940/149‑1 (MQ=255) cATGAGATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCtt > 2:68664/1‑132 (MQ=255) cATGAGATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCtt < 1:68664/132‑1 (MQ=255) aTGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGAGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACg > 1:94527/1‑149 (MQ=255) gAAATTTGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAAc > 8:59212/1‑145 (MQ=255) gAAATTTGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAAc < 7:59212/145‑1 (MQ=255) ccTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCt < 3:1390/149‑1 (MQ=255) cTGCAAGGTTCGGCTTAGACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTg < 2:94527/149‑1 (MQ=255) cAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGc < 6:132673/149‑1 (MQ=255) gTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTAt < 8:12534/137‑1 (MQ=255) gTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTAt > 7:12534/1‑137 (MQ=255) gCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCt < 5:114084/149‑1 (MQ=255) gCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCt > 8:218350/1‑149 (MQ=255) acCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGatcatc < 1:152806/142‑1 (MQ=255) acCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGatcatc > 2:152806/1‑142 (MQ=255) ccAGCCTGGcacctggtcatacagcgtgcccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgaggccacccgtcgcccccgcc > 2:135667‑M1/1‑9 (MQ=255) ccAGCCTGGGCACGCTGTATGCCCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCgg > 2:263915/1‑149 (MQ=255) cAGCCTGGcacctggtcatacagcgtgcccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgaggccacccgtcgcccccgccc > 3:146176‑M1/1‑8 (MQ=255) gCCTGGGCACGCTGTATGACCAG‑GTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgag > 4:39747‑M2/1‑26 (MQ=255) gCCTGGGCACGCTGTATGACCAG‑GTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgag < 3:39747‑M2/126‑101 (MQ=255) gCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAg < 7:218350/149‑1 (MQ=255) tGGcacctggtcatacagcgtgcccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgaggc < 2:161911‑M1/125‑123 (MQ=255) tGGcacctggtcatacagcgtgcccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgaggc > 1:161911‑M1/1‑3 (MQ=255) tGGGCACGCTGTATGACCAG‑GTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttc < 7:62515‑M2/94‑72 (MQ=255) tGGGCACGCTGTATGACCAG‑GTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttc > 8:62515‑M2/1‑23 (MQ=255) ggcacctggtcatacagcgtgcccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgaggccacccgtcgcccccgcccaactgct > 2:5763‑M1/1‑2 (MQ=255) ggCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAgcg > 2:32081/1‑149 (MQ=255) ggCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAgc < 4:36470/148‑1 (MQ=255) | TGGGAGGGCATCATCAACAGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCG > NC_002947/3102386‑3102678 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |