New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3102530	40 (0.810)	4 (0.090)	4/238	NT	9.4%	coding (361/642 nt)	PP_2712	hypothetical protein
	?	NC_002947	= 3102550	40 (0.870)					coding (381/642 nt)	PP_2712	hypothetical protein

AGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCGCTACC  >  NC_002947/3102404‑3102683                                                                                                                                                     |                                                                                                                                      agcagTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGcc                                                                                                                                     >  2:5763‑M2/1‑147 (MQ=255)        gggCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGccaggctg                                                                                                                               >  3:146176‑M2/1‑140 (MQ=255)         ggCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGccaggctgg                                                                                                                              >  2:135667‑M2/1‑139 (MQ=255)          gCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGCACGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGc                                                                                                                             <  1:94575/149‑1 (MQ=255)                          gCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGcca                                                                                                                                    >  1:161911‑M2/1‑122 (MQ=255)                          gCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGcca                                                                                                                                    <  2:161911‑M2/125‑4 (MQ=255)                            cTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGc                                                                                                          >  4:166191/1‑149 (MQ=255)                            cTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACACCGC‑CGCCCTGCAAAGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGAGATGc                                                                                                          >  7:203226/1‑149 (MQ=255)                                           aaGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGAc                                                                                             >  4:142191/1‑147 (MQ=255)                                                    gcggcgAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGa                                                                                         >  7:58779/1‑142 (MQ=255)                                                    gcggcgAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGa                                                                                         <  8:58779/142‑1 (MQ=255)                                                         gAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTc                                                                                                                  >  7:148518/1‑112 (MQ=255)                                                         gAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTc                                                                                                                  <  8:148518/112‑1 (MQ=255)                                                          aaaGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGc                                                                            >  6:114084/1‑149 (MQ=255)                                                             gCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCtt                                                                         >  4:134322/1‑149 (MQ=255)                                                              cTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTg                                                                        >  5:132673/1‑149 (MQ=255)                                                                 gCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCa                                                                      <  3:166191/148‑1 (MQ=255)                                                                      gAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATc                                                                  <  6:82686/147‑1 (MQ=255)                                                                       aGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAAc                                                               >  3:36470/1‑149 (MQ=255)                                                                        gCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGc                                                                       >  4:176346/1‑140 (MQ=255)                                                                        gCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGc                                                                       <  3:176346/140‑1 (MQ=255)                                                                         cAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAAccc                                                             >  1:124248/1‑149 (MQ=255)                                                                             ccATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAAc                                                         <  2:79940/149‑1 (MQ=255)                                                                              cATGAGATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCtt                                                                         >  2:68664/1‑132 (MQ=255)                                                                              cATGAGATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCtt                                                                         <  1:68664/132‑1 (MQ=255)                                                                               aTGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAGAGTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACg                                                        >  1:94527/1‑149 (MQ=255)                                                                                 gAAATTTGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAAc                                                         <  7:59212/145‑1 (MQ=255)                                                                                 gAAATTTGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAAc                                                         >  8:59212/1‑145 (MQ=255)                                                                                                    ccTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCt                                   <  3:1390/149‑1 (MQ=255)                                                                                                     cTGCAAGGTTCGGCTTAGACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTg                                  <  2:94527/149‑1 (MQ=255)                                                                                                        cAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGc                               <  6:132673/149‑1 (MQ=255)                                                                                                            gTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTAt                                       <  8:12534/137‑1 (MQ=255)                                                                                                            gTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTAt                                       >  7:12534/1‑137 (MQ=255)                                                                                                                 gCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCt                      <  5:114084/149‑1 (MQ=255)                                                                                                                 gCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCt                      >  8:218350/1‑149 (MQ=255)                                                                                                                       acCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGatcatc                       >  2:152806/1‑142 (MQ=255)                                                                                                                       acCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGatcatc                       <  1:152806/142‑1 (MQ=255)                                                                                                                        ccAGCCTGGGCACGCTGTATGCCCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCgg               >  2:263915/1‑149 (MQ=255)                                                                                                                           gCCTGGGCACGCTGTATGACCAG‑GTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgag                                   <  3:39747‑M2/126‑101 (MQ=255)                                                                                                                           gCCTGGGCACGCTGTATGACCAG‑GTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttcgccgccttgaccttgcccagtgcaccgag                                   >  4:39747‑M2/1‑26 (MQ=255)                                                                                                                           gCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAg            <  7:218350/149‑1 (MQ=255)                                                                                                                              tGGGCACGCTGTATGACCAG‑GTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttc                                                                <  7:62515‑M2/94‑72 (MQ=255)                                                                                                                              tGGGCACGCTGTATGACCAG‑GTGccaggctggtgtaagccgaaccttgcagggcggcggggtccaatttcatggcctgctccaggctagctttc                                                                >  8:62515‑M2/1‑23 (MQ=255)                                                                                                                                ggCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAgcg       >  2:32081/1‑149 (MQ=255)                                                                                                                                ggCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAgc        <  4:36470/148‑1 (MQ=255)                                                                                                                                  cACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAgcgc      >  1:3808/1‑148 (MQ=255)                                                                                                                                     gCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCt                      >  4:131949/1‑129 (MQ=255)                                                                                                                                     gCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCt                      <  3:131949/129‑1 (MQ=255)                                                                                                                                     gCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCGCTAcc  <  3:142191/149‑1 (MQ=255)                                                                                                                                     gCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCGCTAcc  <  3:134322/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                      AGCAGTTGGGCGGGGGCGACGGGTGGCCTCGGTGCACTGGGCAAGGTCAAGGCGGCGAAAGCTAGCCTGGAGCAGGCCATGAAATTGGACCCCGC‑CGCCCTGCAAGGTTCGGCTTACACCAGCCTGGGCACGCTGTATGACCAG‑GTGCCAGGCTGGCCTATCGGTTTCGGTGATGCCGAGATGGCCGACAAGATGCTGCGCAAAGCCTTGCAGATCAACCCCAACGGTATCGACAGCAACTATTTCTGGGCCGATCATCTGTATCGGCAGAAGCGCTACC  >  NC_002947/3102404‑3102683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.