New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 312602949 (0.990)4 (0.080) 4/246 NT 8.6% coding (241/594 nt) PP_2743 GNAT family acetyltransferase
?NC_002947 = 3126058 38 (0.800)coding (212/594 nt) PP_2743 GNAT family acetyltransferase

GTGGCGAAGAAACTCGGCACCCAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAGGTTTCTCCAGGTGCGGCGAGCTTGCTCC  >  NC_002947/3125883‑3126175
                                                                                                                                                   |                                                                                                                                                  
gTGGCGAAGAAACTCGGCACCCAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTgcgcgc                                                                                                                                                   >  5:26960/1‑148 (MQ=255)
     gaagaaACTCGGCACCCAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCa                                                                                                                                             >  7:190980/1‑149 (MQ=255)
        gaaACTCGGCACCCAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAg                                                                                                                                          >  2:193949/1‑149 (MQ=255)
        gaaACTCGGCACCCAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAg                                                                                                                                          >  2:76290/1‑149 (MQ=255)
          aaCTCGGCACCCAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGc                                                                                                                                         >  3:199218/1‑148 (MQ=255)
            cTCGGCACCCAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTAt                                                                                                                                      <  4:199218/149‑1 (MQ=255)
            cTCGGCACCCAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTAt                                                                                                                                      <  4:59282/149‑1 (MQ=255)
             tCGGCACCCAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATg                                                                                                                                     >  1:84051/1‑149 (MQ=255)
              cGGCACCCAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGc                                                                                                                                    <  6:26960/149‑1 (MQ=255)
                    ccAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGCTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCaa                                                                                                                                                 <  1:47279/131‑1 (MQ=255)
                    ccAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGtcgtcggcatgatggctagcta                                                                                                                              >  8:251616‑M1/1‑127 (MQ=255)
                    ccAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCaa                                                                                                                                                 >  2:47279/1‑130 (MQ=255)
                      aGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGcc                                                                                                                            <  1:289755/149‑1 (MQ=255)
                        ccccTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCGATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGa                                                                                                                          >  6:138259/1‑149 (MQ=255)
                        ccccTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGCGGCCGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGa                                                                                                                          >  5:105250/1‑149 (MQ=255)
                          ccTGGCTCCGCCAGGCCTCATCCAGTGCCAGGATGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGTCTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATg                                                                                                                        <  6:226132/149‑1 (MQ=255)
                                tCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGtcatcggcatgatgcatagctatgccttgcgcg                                                                                                                   >  5:164613‑M1/1‑115 (MQ=255)
                                     cAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGCAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGtcatcggcatgatgcatagctatgccttgcgcgcaacgc                                                                                                             <  7:251616‑M1/149‑40 (MQ=255)
                                      aGGCCTCATCCTGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGtcatcggcatgatgcatagctatgccttgcgcgcaacgcc                                                                                                            <  6:164613‑M1/149‑41 (MQ=255)
                                        gCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTAt                                                                                                                                      <  4:4701/121‑1 (MQ=255)
                                        gCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTAt                                                                                                                                      >  3:4701/1‑121 (MQ=255)
                                           tCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGt                                                                                                       >  3:290160/1‑149 (MQ=255)
                                           tCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGt                                                                                                       >  6:263029/1‑149 (MQ=255)
                                             aTCCAGTGCCAGGGTTGATTTGTTCTAGGTATCGGGTATATCCATGTCGGAATAAGTCGCGAGGACGGGGTCGGTCTCGACTGGCGTGTCAGGCGTTGCGCGGAAGGCATAGCTATGCATGATTCCGATGACGCGCCCTTCGAAtgtg                                                                                                      <  8:174961/148‑1 (MQ=255)
                                                   tGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCAt                                                                                                 >  7:220075/1‑147 (MQ=255)
                                                   tGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCa                                                                                               <  5:263029/149‑1 (MQ=255)
                                                               tatGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTg                                                                                    >  3:125437/1‑148 (MQ=255)
                                                               tatGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTg                                                                                    <  2:296174/148‑1 (MQ=255)
                                                               tatGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGt                                                                                   <  4:125437/149‑1 (MQ=255)
                                                                 tGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTa                                                                                  <  1:76290/148‑1 (MQ=255)
                                                                 tGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCACTTCGAAAGTGGCCATCAGGCCGTTCTTGTa                                                                                  <  1:193949/148‑1 (MQ=255)
                                                                   tACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATg                                                                                >  1:147478/1‑148 (MQ=255)
                                                                    aCAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCa                                                                                               >  2:91246/1‑132 (MQ=255)
                                                                    aCAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCa                                                                                               <  1:91246/132‑1 (MQ=255)
                                                                         gTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTc                                                                         >  6:223773/1‑149 (MQ=255)
                                                                            tCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGcc                                                                      <  5:220126/149‑1 (MQ=255)
                                                                               ggTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTg                                                                   >  6:275859/1‑149 (MQ=255)
                                                                                           tCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCTTa                                                       <  4:290160/149‑1 (MQ=255)
                                                                                             ggAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTg                                                                                                      <  5:139726/100‑1 (MQ=255)
                                                                                             ggAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTg                                                                                                      >  6:139726/1‑100 (MQ=255)
                                                                                              gAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGc                                                     >  4:254937/1‑148 (MQ=255)
                                                                                                     gcgcGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCg                                                                                                                           <  8:32994/71‑1 (MQ=255)
                                                                                                     gcgcGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCg                                                                                                                           >  7:32994/1‑71 (MQ=255)
                                                                                                               ggggTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCa                                   <  6:105250/149‑1 (MQ=255)
                                                                                                                      ggtcTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCa                                                                                           <  1:80639/87‑1 (MQ=255)
                                                                                                                      ggtcTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCa                                                                                           >  2:80639/1‑87 (MQ=255)
                                                                                                                      ggtcTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAgg                             <  8:190980/149‑1 (MQ=255)
                                                                                                                       gtcTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAGGt                            <  7:210364/149‑1 (MQ=255)
                                                                                                                         ctcGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAGGttt                          >  3:66985/1‑149 (MQ=255)
                                                                                                                            gACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAGGttt                          <  3:254937/146‑1 (MQ=255)
                                                                                                                            gACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAGGTTtc                         <  2:147478/147‑1 (MQ=255)
                                                                                                                                      tCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAGGTTTCTCCAGGTgcggc             <  5:275859/149‑1 (MQ=255)
                                                                                                                                       cAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAgg                             >  5:220261/1‑132 (MQ=255)
                                                                                                                                       cAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAgg                             <  6:220261/132‑1 (MQ=255)
                                                                                                                                         ggCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGAcgcgcaacgcctgacaggccagtcgagaccgaccccgtcctcgcgccttattccgacatggaaatacccgataccttgtacatatccagcctggcacaggatgaggcct          <  6:164613‑M2/149‑110 (MQ=255)
                                                                                                                                          gCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGAcgcgcaacgcctgacaggccagtcgagaccgaccccgtcctcgcgccttattgcgacatggaaatacccgataccttgtacatatccagcctggcactggatgaggcctg         <  7:251616‑M2/149‑111 (MQ=255)
                                                                                                                                            gTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAGGTTTCTCCAGGTGCGGCGAGCtt       <  4:66985/149‑1 (MQ=255)
                                                                                                                                             ttGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAGGTTTCTCCAGGTGCGGCGAGCTTg      <  2:84051/149‑1 (MQ=255)
                                                                                                                                                cgcgcAAGGCATAGCTATGCATCATGCCGATGAcgcgcaacgcctgacaggccagtcgagaccgaccccgtcctcgcgccttattccgacatggaaatacccgataccttgtacatatccagcctggcactggatgaggcctggcgga    >  5:164613‑M2/1‑33 (MQ=255)
                                                                                                                                                 gcgcAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAGGTTTCTCCAGGTGCGGCGAGCTTGCTcc  <  8:220075/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
GTGGCGAAGAAACTCGGCACCCAGCCCCTGGCTCCGCCAGGCCTCATCCAGTGCCAGGCTGGATATGTACAAGGTATCGGGTATTTCCATGTCGGAATAAGGCGCGAGGACGGGGTCGGTCTCGACTGGCCTGTCAGGCGTTGCGCGCAAGGCATAGCTATGCATCATGCCGATGACGCGCCCTTCGAAAGTGGCCATCAGGCAGTTCTTGTATGAAAAGTCGCCCTGTTCTCTGGCATAGCGAGACGCACCGACACTCAGCAAGGTTTCTCCAGGTGCGGCGAGCTTGCTCC  >  NC_002947/3125883‑3126175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.