New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3198090 =	35 (0.710)	3 (0.060)	3/248	NT	7.9%	coding (567/1527 nt)	ethA	FAD‑containing monooxygenase EthA
	?	NC_002947	3198123 =	36 (0.750)					coding (534/1527 nt)	ethA	FAD‑containing monooxygenase EthA

GCAGGACCTTGCGCAGGAACGCTGCAACCCCATCGTTGGCGGGCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAACAGCCAG  >  NC_002947/3197945‑3198234                                                                                                                                                  |                                                                                                                                                  ccgcacggcgcagatccgcacggtcgaatgccgctggctgttcagtgcaggcggttactagcgctatgatcagggcttcagcccccggttcgaaggcagcgaacagttcaagggccagatcatccatccgcaacactggccggaaGAcc                                                                                                                                                <  7:167024‑M1/4‑1 (MQ=255)           gcgcAGGAACGCTGCAACCCCATCGTTGGCGGGCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACgcgc                                                                                                                                       <  1:278753/148‑1 (MQ=255)                  aaCGCTGCAACCCCATCGTTGGCGGGCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGgt                                                                                                                               <  1:191081/149‑1 (MQ=255)                          aaCCCCATCGTTGGCGGGCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGa                                                                                                                       <  4:281654/149‑1 (MQ=255)                          aaCCCCATCGTTGGCGGGCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGa                                                                                                                       <  2:30561/149‑1 (MQ=255)                            ccccATCGTTGGCGGGCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAgg                                                                                                                     <  5:278315/149‑1 (MQ=255)                             cccATCGTTGGCGGGCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGCCGCTCTTGCCGGTGTAGTCGAGGt                                                                                                                    >  4:59551/1‑149 (MQ=255)                             cccATCGTTGGCGGGCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGt                                                                                                                    >  2:233642/1‑149 (MQ=255)                             cccATCGTTGGCGGGATGGTTTATGATGTAGGAGGGCGTGCGCTGCATAATGGTGATGCTGGCGACCTTGTAGGCCATGGCCGGGATCAGGGTTACCGAAGTTGCGCCAATGCCAATGACCACTAGTCGCTTGCAGGTGTAGTCGAgg                                                                                                                     >  4:55357/1‑148 (MQ=255)                                         gggCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAgt                                                                                                        <  1:132373/149‑1 (MQ=255)                                           cagtgcaggcggttactatcgctatgatcagggcttcagcccccggttcgaaggcagcgaacagttcaagggccagatcatccatccgcaacactggccggaaGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAgtg                                                                                                       >  8:194661‑M1/104‑148 (MQ=255)                                               gTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCg                                                                                                  >  1:6918/1‑149 (MQ=255)                                                 tgatgaTGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGtt                                                                                                     >  6:256761/1‑144 (MQ=255)                                                 tgatgaTGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGtt                                                                                                     <  5:256761/144‑1 (MQ=255)                                                  gatgatGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCggat                                                                                               >  6:226735/1‑149 (MQ=255)                                                   atgatgTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCggatg                                                                                              >  3:198309/1‑149 (MQ=255)                                                    tgatgTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCggatg                                                                                              >  5:152391/1‑148 (MQ=255)                                                            atcgctatgatcagggcttcagcccccggttcgaaggcagcgaacagttcaagggccagatcatccatccgcaacactggccggaaGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCg                                                                                                              <  3:8054‑M1/38‑1 (MQ=255)                                                            atcgctatgatcagggcttcagcccccggttcgaaggcagcgaacagttcaagggccagatcatccatccgcaacactggccggaaGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCg                                                                                                              >  4:8054‑M1/87‑124 (MQ=255)                                                             aggGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTgg                                                                                    <  2:6918/149‑1 (MQ=255)                                                              gggCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTgg                                                                                    <  4:198309/148‑1 (MQ=255)                                                                                ggTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCAGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGc                                                                >  7:203048/1‑149 (MQ=255)                                                                                caccaTGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGc                                                                >  3:264360/5‑149 (MQ=255)                                                                                 gTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGcc                                                               >  5:234521/1‑149 (MQ=255)                                                                                 gTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGcc                                                               >  5:230152/1‑149 (MQ=255)                                                                                    aTGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTc                                                            <  6:152391/149‑1 (MQ=255)                                                                                                      gCCATGGCCTGGATCAGGGTTAGCGCAGTTTCGTCACTTGATATGACCACGACGAGATTTCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGAGGATGGTTGATATGGCCCTTGAACTGAT‑CTCTGCCTTCGAACCGGGGGCTGAAGcc                                          <  3:55357/149‑1 (MQ=255)                                                                                                      gCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGcc                                          <  3:59551/149‑1 (MQ=255)                                                                                                               gggATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAg                                                                                                                      <  2:260554/65‑1 (MQ=255)                                                                                                                ggATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAg                                <  6:230152/149‑1 (MQ=255)                                                                                                                ggATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAg                                <  6:234521/149‑1 (MQ=255)                                                                                                                   tcccgggtACCGCAGTTGCGCCACTGCAAATGACCACTACGCGCTTGCCGGTGTAGTCGATGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGa                             <  8:203048/142‑1 (MQ=255)                                                                                                                   tCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCTTAGCGa                             >  5:276912/1‑149 (MQ=255)                                                                                                                   tCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGa                             >  1:142870/1‑149 (MQ=255)                                                                                                                     aGGGTTACCGCAGTTGCGCAACTGGCAATGACCACGTCGCGCTTTCGGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGACCTTGAACTGTT‑CGGTGCCTTCGAACGGGGGGCTGAAGCCCTTATCATAGCGATa                           <  4:264360/149‑1 (MQ=255)                                                                                                                      gggTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAg                          >  1:262915/1‑149 (MQ=255)                                                                                                                           aCCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAAc                      <  5:226735/148‑1 (MQ=255)                                                                                                                            ccGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTTCCGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAAcc                     <  1:233642/149‑1 (MQ=255)                                                                                                                                         aCTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAAca       <  2:142870/149‑1 (MQ=255)                                                                                                                                             ccAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAAcagc     >  1:178410/1‑147 (MQ=255)                                                                                                                                              cAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAAcagccag  >  5:121697/1‑149 (MQ=255)                                                                                                                                              cAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCATCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCggggg                                                  <  2:70630/101‑1 (MQ=255)                                                                                                                                              cAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCATCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCggggg                                                  >  1:70630/1‑101 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GCAGGACCTTGCGCAGGAACGCTGCAACCCCATCGTTGGCGGGCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAACAGCCAG  >  NC_002947/3197945‑3198234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.