New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3198090 =	35 (0.710)	3 (0.060)	3/248	NT	7.9%	coding (567/1527 nt)	ethA	FAD‑containing monooxygenase EthA
	?	NC_002947	3198123 =	36 (0.750)					coding (534/1527 nt)	ethA	FAD‑containing monooxygenase EthA

GGGCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAACAGCCAGCGGCATTCGACCGTGCGGATCTGCGCCGTGCGG  >  NC_002947/3197985‑3198267                                                                                                                                           |                                                                                                                                                  gggCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAgt                                                                                                                                         <  1:132373/149‑1 (MQ=255)   cagtgcaggcggttactatcgctatgatcagggcttcagcccccggttcgaaggcagcgaacagttcaagggccagatcatccatccgcaacactggccggaaGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAgtg                                                                                                                                        >  8:194661‑M1/104‑148 (MQ=255)       gTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCg                                                                                                                                   >  1:6918/1‑149 (MQ=255)         tgatgaTGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGtt                                                                                                                                      <  5:256761/144‑1 (MQ=255)         tgatgaTGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGtt                                                                                                                                      >  6:256761/1‑144 (MQ=255)          gatgatGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCggat                                                                                                                                >  6:226735/1‑149 (MQ=255)           atgatgTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCggatg                                                                                                                               >  3:198309/1‑149 (MQ=255)            tgatgTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCggatg                                                                                                                               >  5:152391/1‑148 (MQ=255)                    atcgctatgatcagggcttcagcccccggttcgaaggcagcgaacagttcaagggccagatcatccatccgcaacactggccggaaGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCg                                                                                                                                               <  3:8054‑M1/38‑1 (MQ=255)                    atcgctatgatcagggcttcagcccccggttcgaaggcagcgaacagttcaagggccagatcatccatccgcaacactggccggaaGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCg                                                                                                                                               >  4:8054‑M1/87‑124 (MQ=255)                     aggGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTgg                                                                                                                     <  2:6918/149‑1 (MQ=255)                      gggCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTgg                                                                                                                     <  4:198309/148‑1 (MQ=255)                                        ggTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCAGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGc                                                                                                 >  7:203048/1‑149 (MQ=255)                                        caccaTGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGc                                                                                                 >  3:264360/5‑149 (MQ=255)                                         gTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGcc                                                                                                >  5:234521/1‑149 (MQ=255)                                         gTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGcc                                                                                                >  5:230152/1‑149 (MQ=255)                                            aTGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTc                                                                                             <  6:152391/149‑1 (MQ=255)                                                              gCCATGGCCTGGATCAGGGTTAGCGCAGTTTCGTCACTTGATATGACCACGACGAGATTTCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGAGGATGGTTGATATGGCCCTTGAACTGAT‑CTCTGCCTTCGAACCGGGGGCTGAAGcc                                                                           <  3:55357/149‑1 (MQ=255)                                                              gCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGcc                                                                           <  3:59551/149‑1 (MQ=255)                                                                        ggATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAg                                                                 <  6:230152/149‑1 (MQ=255)                                                                        ggATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAg                                                                 <  6:234521/149‑1 (MQ=255)                                                                           tcccgggtACCGCAGTTGCGCCACTGCAAATGACCACTACGCGCTTGCCGGTGTAGTCGATGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGa                                                              <  8:203048/142‑1 (MQ=255)                                                                           tCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCTTAGCGa                                                              >  5:276912/1‑149 (MQ=255)                                                                           tCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGa                                                              >  1:142870/1‑149 (MQ=255)                                                                             aGGGTTACCGCAGTTGCGCAACTGGCAATGACCACGTCGCGCTTTCGGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGACCTTGAACTGTT‑CGGTGCCTTCGAACGGGGGGCTGAAGCCCTTATCATAGCGATa                                                            <  4:264360/149‑1 (MQ=255)                                                                              gggTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAg                                                           >  1:262915/1‑149 (MQ=255)                                                                                   aCCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAAc                                                       <  5:226735/148‑1 (MQ=255)                                                                                    ccGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTTCCGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAAcc                                                      <  1:233642/149‑1 (MQ=255)                                                                                              cactggccggaagacctcgactacaccggcaagcgcgtcgtggtcTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTg                                            >  8:194661‑M2/46‑148 (MQ=255)                                                                                                 aCTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAAca                                        <  2:142870/149‑1 (MQ=255)                                                                                                     cggaagacctcgactacaccggcaagcgcgtcgtggtcTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGAt                                                             >  4:8054‑M2/39‑124 (MQ=255)                                                                                                     cggaagacctcgactacaccggcaagcgcgtcgtggtcTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGAt                                                             <  3:8054‑M2/86‑1 (MQ=255)                                                                                                     ccAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAAcagc                                      >  1:178410/1‑147 (MQ=255)                                                                                                      cAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAAcagccag                                   >  5:121697/1‑149 (MQ=255)                                                                                                      cAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCATCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCggggg                                                                                   <  2:70630/101‑1 (MQ=255)                                                                                                      cAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCATCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCggggg                                                                                   >  1:70630/1‑101 (MQ=255)                                                                                                           acgacgtcgCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGc                                                                            <  6:195861/100‑1 (MQ=255)                                                                                                           ACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAACAGCCAGCGGCa                              <  7:693‑M1/149‑1 (MQ=255)                                                                                                           ACCACGACGCGCTTGCCGGTGTAGTCGACGTCTTCCGGCCAGTGTTGAGGATCGATCATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGc                                                                            <  5:195861‑M1/103‑1 (MQ=255)                                                                                                                   gcgcTTGCCGGTGTAGTCGTGGTGTTCCGGCGAGTGTTGCGGATGCATGATCTGGCCCTTGAACTGTT‑CGCTGGCTGCGAACCGGGGGCGGCCGCCGTGCTGATAGCGGTAGTCAGCGCCTGCACTGACCAGCCGGCGGCATTCgcgcg                      >  8:167024/1‑145 (MQ=255)                                                                                                                      cTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAACAGCCAGCGGCATTCGACCGTGc                   >  5:242569/1‑149 (MQ=255)                                                                                                                         gCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAACAGCCAGCGGCATTCGACCGTGCGGa                >  5:102175/1‑149 (MQ=255)                                                                                                                           cGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAAca                                        <  5:86114/123‑1 (MQ=255)                                                                                                                           cGGTGTAGTAGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAAca                                        >  6:86114/1‑123 (MQ=255)                                                                                                                                   tCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTg                                            <  7:162408/111‑1 (MQ=255)                                                                                                                                   tCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTg                                            >  8:162408/1‑111 (MQ=255)                                                                                                                                   tCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAACAGCCAGCGGCATTCGACCGTGCGGATCTGCGCCGt      >  1:275639/1‑149 (MQ=255)                                                                                                                                       ggtcTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGCTAGTAACCGCCTGCACTGAACAGCCAGCGGCATTCGACCGTGCGGATCTGCGCCGTGCgg  <  7:167024‑M2/145‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                  GGGCTGGTTGATGATGTAGGAGGGCGTGCGCTGCAGCATGGTGATGCTGGCGACCTTGTCGGCCATGGCCGGGATCAGGGTTACCGCAGTTGCGCCACTGCCAATGACCACGACGCGCTTGCCGGTGTAGTCGAGGTCTTCCGGCCAGTGTTGCGGATGGATGATCTGGCCCTTGAACTGTT‑CGCTGCCTTCGAACCGGGGGCTGAAGCCCTGATCATAGCGATAGTAACCGCCTGCACTGAACAGCCAGCGGCATTCGACCGTGCGGATCTGCGCCGTGCGG  >  NC_002947/3197985‑3198267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.