New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3241224	40 (0.810)	4 (0.090)	4/242	NT	9.1%	coding (920/1650 nt)	PP_2838	hypothetical protein
	?	NC_002947	= 3241320	42 (0.900)					coding (1016/1650 nt)	PP_2838	hypothetical protein

TGCGAGCGGCTGGGTGAATGGGACCTGGCCACGGCGGTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGC  >  NC_002947/3241079‑3241372                                                                                                                                                    |                                                                                                                                                     tGCGAGCGGCTGGGTGAATGGGACCTGGCCACGGCGGTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCAcc                                                                                                                                                   >  7:261053/1‑149 (MQ=255)  gCGAGCGGCTGGGTGAATGGGACCTGGCCACGGCGGTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCt                                                                                                                                                  >  4:174837/1‑149 (MQ=255)    gAGCGGCTGGGTGAATGGGACCTGGCCACGGCGGTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGc                                                                                                                                                >  4:40956/1‑149 (MQ=255)              gTGAATGGGACCTGGCCACGGCGGTGTATGCGCAATGCAACCATCCCGCAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCt                                                                                                                                       >  1:229179/1‑149 (MQ=255)               tGAATGGGACCTGGCCACGGCGGTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTgg                                                                                                                                     <  3:300082/149‑1 (MQ=255)                 aaTGGGACCTGGCCACGGCGGTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCAGTGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTgga                                                                                                                                    <  1:225086/149‑1 (MQ=255)                 aaTGGGACCTGGCCACGGCGGTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTggag                                                                                                                                   <  7:225549/149‑1 (MQ=255)                 aaTGGGACCTGGCCACGGCGGTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTggag                                                                                                                                   <  4:35512/149‑1 (MQ=255)                  aTGGGACCTGGCCACGGCGGTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGCCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTggag                                                                                                                                   >  1:264285/1‑148 (MQ=255)                              cACGGCGGTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTg                                                                                                                       >  6:293062/1‑148 (MQ=255)                              cACGGCGGTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGc                                                                                                                      <  3:174837/149‑1 (MQ=255)                                cggcggTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCaa                                                                                                                    <  3:40956/149‑1 (MQ=255)                                    ggTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCa                                                                                                                >  8:117053/1‑149 (MQ=255)                                      tgtATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCAtg                                                                                                              <  5:293062/149‑1 (MQ=255)                                          tGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCAtgctgc                                                                                                          <  7:117053/149‑1 (MQ=255)                                                         tCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGgcgcgc                                                                                            >  6:37205/1‑148 (MQ=255)                                                           cc‑cAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCaa                                                                                          <  1:71763/148‑1 (MQ=255)                                                            c‑cAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TCCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGc                                                                                        >  8:76317/1‑149 (MQ=255)                                                                   gcgcATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTcggcg                                                                                  >  7:164726/1‑149 (MQ=255)                                                                     gcATTCGCCAGGTGAGGGGGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCggcggc                                                                                <  8:239408/149‑1 (MQ=255)                                                                      cATTCGCCAGGTGAGTGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGcc                                                                               <  2:264285/149‑1 (MQ=255)                                                                       aTTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGccc                                                                              >  3:179248/1‑149 (MQ=255)                                                                       aTTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGccc                                                                              >  7:278777/1‑149 (MQ=255)                                                                             cAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCca                                                                          >  8:24148/1‑147 (MQ=255)                                                                                  gAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCgtggtgcgctggcgccgctgtggcgggccgccgagcttgcgcgccaggcgtggcagcttgcgttgcagcgcctgctcctccag                                                                   >  5:108841‑M1/1‑66 (MQ=255)                                                                                      gTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCa                                                               <  8:278777/149‑1 (MQ=255)                                                                                                     gAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGgcgc                                                                 <  3:82122/132‑1 (MQ=255)                                                                                                     gAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGgcgc                                                                 >  4:82122/1‑132 (MQ=255)                                                                                                       aCAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCgtggtgcgctggcgccgctgtggcgggccgccgagcttgcgcgccaggcgtggcagcttgcgttgcagcgcctgctcctccagcgcattggcaggtgccgctgc                                              <  6:108841‑M1/149‑105 (MQ=255)                                                                                                       aCAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCgtggtgcgctggcgccgctgtggcgggccgccgagcttgcgcgccaggcgtggcagcatgcgttgcagcgcctgctcctccagcgcattggcaggtgccgctgc                                              >  3:224817‑M1/1‑45 (MQ=255)                                                                                                       aCAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACgccgctg                                               <  5:43263‑M2/148‑8 (MQ=255)                                                                                                        cAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCgtggtgcgctggcgccgctgtggcgggccgccgagcttgcgcgccaggcgtggcagcatgcgttgcagcgcctgctcctccagcgcattggcaggtgccgctgcc                                             <  4:224817‑M1/149‑106 (MQ=255)                                                                                                          gTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAg                                                              >  5:204490/1‑130 (MQ=255)                                                                                                          gTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAg                                                              <  6:204490/130‑1 (MQ=255)                                                                                                             gCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGgcg                                                                                                                          >  4:213615/1‑67 (MQ=255)                                                                                                             gCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGgcg                                                                                                                          <  3:213615/67‑1 (MQ=255)                                                                                                                            cACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTGGAACTg                          >  7:254566/1‑149 (MQ=255)                                                                                                                             aCGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGccc                                                                              <  2:125087/96‑1 (MQ=255)                                                                                                                             aCGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGccc                                                                              >  1:125087/1‑96 (MQ=255)                                                                                                                             aCGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGa                                        >  6:273311/1‑134 (MQ=255)                                                                                                                             aCGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGa                                        <  5:273311/134‑1 (MQ=255)                                                                                                                             aCGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATag                                     >  8:135112/1‑137 (MQ=255)                                                                                                                             aCGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAACCTCGGCGGCCCGCCACAGCGTCGCCAGCGCACCACGCCGCTGGAACTGATag                                     <  7:135112/137‑1 (MQ=255)                                                                                                                               gggCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATa                                      <  7:20868/134‑1 (MQ=255)                                                                                                                               gggCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATa                                      >  8:20868/1‑134 (MQ=255)                                                                                                                                       cAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCgg                  <  1:73632/146‑1 (MQ=255)                                                                                                                                       cAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCgg                  >  2:73632/1‑146 (MQ=255)                                                                                                                                            ggCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACgccgctgccagttgcaacgcccgtgcatgggcctggtgccactg          <  4:224817‑M2/149‑45 (MQ=255)                                                                                                                                             gCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACgccgctgccagttgcaacgcccgtgcatgggcctggtgccactgt         >  3:224817‑M2/1‑104 (MQ=255)                                                                                                                                             gCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCAAGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACgccgctgccagttgcaacgcccgtgcatgggcctggtgccactgt         <  6:108841‑M2/149‑46 (MQ=255)                                                                                                                                              cAGCGGCgtggtgcgctggcgccgctgtggcgggccgccgagcttgcgcgccaggcgtggcagcatgcgttgcagcgcctgctcctccagcgcattggcaggtgccgctgccagttgcaacgcccgtgcatgggcctggtgccactgt         <  5:43263‑M1/148‑142 (MQ=255)                                                                                                                                                 cGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGAcgctgcgctg     <  7:76317/149‑1 (MQ=255)                                                                                                                                                  ggCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTgg    <  3:156639/149‑1 (MQ=255)                                                                                                                                                   gCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTgg    <  6:181538/148‑1 (MQ=255)                                                                                                                                                   gCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTgg    >  5:181538/1‑148 (MQ=255)                                                                                                                                                    cACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGc  <  8:254566/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TGCGAGCGGCTGGGTGAATGGGACCTGGCCACGGCGGTGTATGCGCAATGCAACCATCCC‑CAGGCGCGCATTCGCCAGGTGAGGGTGCTGGAGCGCAGCGAACAGTGGCACCAGGCCCA‑TGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGC  >  NC_002947/3241079‑3241372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.