New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3241224	40 (0.810)	4 (0.090)	4/242	NT	9.1%	coding (920/1650 nt)	PP_2838	hypothetical protein
	?	NC_002947	= 3241320	42 (0.900)					coding (1016/1650 nt)	PP_2838	hypothetical protein

ACAGTGGCACCAGGCCCATGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTGGAGAACACGCTGTTCAACAGCCTGTTTGGCCTGTTGTG  >  NC_002947/3241180‑3241467                                                                                                                                             |                                                                                                                                                    aCAGTGGCACCAGGCCCATGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACgccgctg                                                                                                                                              <  5:43263‑M2/148‑8 (MQ=255)                     cACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTGGAACTg                                                                                                                         >  7:254566/1‑149 (MQ=255)                      aCGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGa                                                                                                                                       <  5:273311/134‑1 (MQ=255)                      aCGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGa                                                                                                                                       >  6:273311/1‑134 (MQ=255)                      aCGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATag                                                                                                                                    >  8:135112/1‑137 (MQ=255)                      aCGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAACCTCGGCGGCCCGCCACAGCGTCGCCAGCGCACCACGCCGCTGGAACTGATag                                                                                                                                    <  7:135112/137‑1 (MQ=255)                        gggCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATa                                                                                                                                     <  7:20868/134‑1 (MQ=255)                        gggCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATa                                                                                                                                     >  8:20868/1‑134 (MQ=255)                                cAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCgg                                                                                                                 <  1:73632/146‑1 (MQ=255)                                cAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCgg                                                                                                                 >  2:73632/1‑146 (MQ=255)                                     ggCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACgccgctgccagttgcaacgcccgtgcatgggcctggtgccactg                                                                                                         <  4:224817‑M2/149‑45 (MQ=255)                                      gCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACgccgctgccagttgcaacgcccgtgcatgggcctggtgccactgt                                                                                                        >  3:224817‑M2/1‑104 (MQ=255)                                      gCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCAAGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACgccgctgccagttgcaacgcccgtgcatgggcctggtgccactgt                                                                                                        <  6:108841‑M2/149‑46 (MQ=255)                                          cGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGAcgctgcgctg                                                                                                    <  7:76317/149‑1 (MQ=255)                                           ggCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTgg                                                                                                   <  3:156639/149‑1 (MQ=255)                                            gCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTgg                                                                                                   <  6:181538/148‑1 (MQ=255)                                            gCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTgg                                                                                                   >  5:181538/1‑148 (MQ=255)                                             cACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGc                                                                                                 <  8:254566/149‑1 (MQ=255)                                                   ccAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTgaa                                                                                           <  8:261053/149‑1 (MQ=255)                                                   ccAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTgaa                                                                                           <  4:179248/149‑1 (MQ=255)                                                       tGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGaagaag                                                                                       <  1:126654/149‑1 (MQ=255)                                                           cTGGAGGAGCAGGCGCTGCAACGCAAGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACgccgctgccagttgcaacgcccgtgcatgggcctggtgccactgttcgctgcgctccagcaccctc                                                                                   >  5:108841‑M2/1‑83 (MQ=255)                                                               aggagCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGt                                                                               <  7:24148/149‑1 (MQ=255)                                                                ggagCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGt                                                                               >  1:76122/1‑148 (MQ=255)                                                                 gagCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGt                                                                                   <  6:318164/143‑1 (MQ=255)                                                                 gagCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGt                                                                                   >  5:318164/1‑143 (MQ=255)                                                                    cAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCg                                                                                    <  6:104141/139‑1 (MQ=255)                                                                    cAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCg                                                                                    >  5:104141/1‑139 (MQ=255)                                                                       gcgcTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCt                                                                       >  1:21425/1‑149 (MQ=255)                                                                           tGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGAt                                                                    >  4:283470/1‑148 (MQ=255)                                                                              atctgaTGCTGCCTCGCCTGGCGCGCAAGCTCGGCGGCCCGGCACAGCTGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCaa                                                                <  7:127602/144‑1 (MQ=255)                                                                                    tgctgcCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAgggg                                                          <  5:37205/149‑1 (MQ=255)                                                                                        gcCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAggggggg                                                       >  1:201165/1‑148 (MQ=255)                                                                                           aCGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGt                                                                                               <  1:149221/105‑1 (MQ=255)                                                                                           aCGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGt                                                                                               >  2:149221/1‑105 (MQ=255)                                                                                                      gcAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTg                                        <  6:131422/149‑1 (MQ=255)                                                                                                       cAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTg                                        >  4:258567/1‑148 (MQ=255)                                                                                                          gCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTCCGTGgag                                     >  8:153362/1‑148 (MQ=255)                                                                                                               gcggcCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTgaagaa                                                                                        >  4:158171/1‑92 (MQ=255)                                                                                                               gcggcCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTgaagaa                                                                                        <  3:158171/92‑1 (MQ=255)                                                                                                                cggcCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTGGAGAACACGc                              <  2:21425/149‑1 (MQ=255)                                                                                                                  gcCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAAc                                                                                                                                          >  4:150283/1‑39 (MQ=255)                                                                                                                  gcCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAAc                                                                                                                                          <  3:150283/39‑1 (MQ=255)                                                                                                                   cccGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTGGAGAACACGCTGt                           <  2:201165/149‑1 (MQ=255)                                                                                                                   cccGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACCCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCCGGCGCATTACGTGGAGAACACGCTgg                           >  4:7708/1‑148 (MQ=255)                                                                                                                        cacaGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTGGAGAACACGCTGTTCaa                       >  2:13567/1‑148 (MQ=255)                                                                                                                        cacaGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTGGAGAACACGCTGTTCAAc                      <  3:258567/149‑1 (MQ=255)                                                                                                                                 gcCAGCGCACGACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGACGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTGGAGAACACGCTGTTCAACAGCCTGttt             >  5:57298/1‑149 (MQ=255)                                                                                                                                       gcACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTGGAGAACACGCTGTTCAACAGCCTGTTTGGCCtg       <  7:153362/149‑1 (MQ=255)                                                                                                                                         tccacGCCGCTGGAACTGATAGAGCTCGAACTGCCCGGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTGGAGAACACGCTGTTCAACAGCCTGTTTGGCCtgtt     <  7:72008/148‑1 (MQ=255)                                                                                                                                           cacGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTGGAGAACACGCTGTTCAACAGCCAGTTTGGCAtgtt     >  8:72008/1‑147 (MQ=255)                                                                                                                                            gcgccgcTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTGGAGAACACGCTGTTCAACAGCCTGTTTGGCCTGTtgtg  <  2:280450/148‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                    ACAGTGGCACCAGGCCCATGCACGGGCGTTGCAACTGGCAGCGGCACCTGCCAATGCGCTGGAGGAGCAGGCGCTGCAACGCATGCTGCCACGCCTGGCGCGCAAGCTCGGCGGCCCGCCACAGCGGCGCCAGCGCACCACGCCGCTGGAACTGATAGAGCTCGAACTGCCCCGCGGGGACGCTGCGCTGGGCGTTGAAGAAGCCGTGCGTCAGCACCTGATGCAAGAGGGGGGGCAGGCGCATTACGTGGAGAACACGCTGTTCAACAGCCTGTTTGGCCTGTTGTG  >  NC_002947/3241180‑3241467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.