New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3476250	41 (0.830)	3 (0.060)	3/246	NT	6.4%	coding (463/2517 nt)	PP_3087	excinuclease ABC subunit A
	?	NC_002947	= 3476286	49 (1.030)					coding (427/2517 nt)	PP_3087	excinuclease ABC subunit A

AGGGATATCGACGTCATAGCCCAGCGTGACCAGGATGTCGCGCAGGTTCTGCCCTTGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATGCGGATCGAACTGGACAAGGTGGTCACGCTACCCACC  >  NC_002947/3476104‑3476398                                                                                                                                                   |                                                                                                                                                     aGGGATATCGACGTCATAGCCCAGCGTGACCAGGATGTCGCGCAGGTTCTGCCCTTGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGc                                                                                                                                                    >  5:62345/1‑149 (MQ=255)      tatCGACGTCATAGCCCAGCGTGACCAGGATGTCGCGCAGGTTCTGCCCTTGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAgg                                                                                                                                               >  6:130286/1‑149 (MQ=255)              tCATAGCCCAGCGTGACCAGGATGTCGCGCAGGTTCTGCCCTTGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCa                                                                                                                                       <  2:255153/149‑1 (MQ=255)                             aCCAGGATGTCGCGCAGGTTCTGCCCTTGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGcc                                                                                                                        >  4:163473/1‑149 (MQ=255)                                   aTGTCGCGCAGGTTCTGCCCTTGCCAGGCCATTGGCCACGCCGCCACCGCACGCACACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTgggg                                                                                                                  <  7:103530/149‑1 (MQ=255)                                      tCGCGCAGGTTCTGCCCTTGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGccccagggcgcttgcccgcagtgccatggcctgggccgt                                                                                                               <  7:15345‑M1/149‑40 (MQ=255)                                       cgcgCAGGTTCTGCCCTTGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGcgt                                                                                                               >  8:11402‑M2/1‑145 (MQ=255)                                       cgcgCAGGTTCTGCCCTCGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGcgtg                                                                                                              <  6:135259‑M2/149‑5 (MQ=255)                                        gcgcAGGTTCTGCCCTTGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGcgtgt                                                                                                             <  8:265155‑M2/149‑6 (MQ=255)                                        gcgcAGGTTCTGCCCTTGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGcgtg                                                                                                              >  1:172784‑M2/1‑144 (MQ=255)                                         cgcAGGTTCTGCCCTTGCCAGGCAATTGGCCACGCCGCCAACTAACGCTCACGGATGGTCAGAGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCATGGGGcctatt                                                                                                            <  4:233930‑M2/149‑7 (MQ=255)                                          gcAGGTTCTGCCCTTGCCAGGCCATTGACCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTc                                                                                                           <  6:324945/149‑1 (MQ=255)                                                    cccTTGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGaaaa                                                                                                   <  5:130286/147‑1 (MQ=255)                                                    cccTCGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGaaaa                                                                                                   <  5:135259/147‑1 (MQ=255)                                                           cAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGc                                                                                          >  3:279813/1‑149 (MQ=255)                                                              gCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTa                                                                                       >  1:263352/1‑149 (MQ=255)                                                               ccATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGccccagggcgcttgcccgcagtgccatggcctggg                                                                                                                   >  8:199216‑M1/1‑85 (MQ=255)                                                               ccATTGGCCACGCCGCCACCGCACGCTCACCGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGccccagggcgcttgcccgcagtgccatggcctggg                                                                                                                   <  7:199216‑M1/120‑36 (MQ=255)                                                                      ccACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCg                                                                               <  3:14561/149‑1 (MQ=255)                                                                      ccACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCg                                                                               >  5:174160/1‑149 (MQ=255)                                                                       cACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGc                                                                              <  3:163473/149‑1 (MQ=255)                                                                         cgccgcCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCtt                                                                            <  2:263352/149‑1 (MQ=255)                                                                            cgccACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGcc                                                                         >  4:78094/1‑149 (MQ=255)                                                                             gccACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGccc                                                                        <  3:78094/149‑1 (MQ=255)                                                                                  cGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCAGCGTACAGCATCGCTTGCCcgggcg                                                                   >  7:297410/1‑149 (MQ=255)                                                                                   gCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCcgggcgg                                                                  <  6:62345/149‑1 (MQ=255)                                                                                   gCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCcgggcgg                                                                  <  4:279813/149‑1 (MQ=255)                                                                                    cACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGaaaa                                                                                                   >  3:300782/1‑115 (MQ=255)                                                                                    cACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGaaaa                                                                                                   <  4:300782/115‑1 (MQ=255)                                                                                     aCGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGAAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCcgggcggg                                                                 >  1:127479/1‑148 (MQ=255)                                                                                               aTGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGcgt                                                                                                               >  8:188942‑M2/1‑89 (MQ=255)                                                                                               aTGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGcgt                                                                                                               <  7:188942‑M2/92‑4 (MQ=255)                                                                                               aTGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGt                                                                                        <  6:122317/115‑1 (MQ=255)                                                                                               aTGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGt                                                                                        >  5:122317/1‑115 (MQ=255)                                                                                                     aGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCggg                                                 <  6:174160/148‑1 (MQ=255)                                                                                                             gTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGt                                                                                                 >  1:142648/1‑92 (MQ=255)                                                                                                             gTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGt                                                                                                 <  2:142648/92‑1 (MQ=255)                                                                                                             gTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCa                                        >  3:296341/1‑149 (MQ=255)                                                                                                                ggggACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCAGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATGc                                     <  8:297410/149‑1 (MQ=255)                                                                                                                ggggACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGAAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATGc                                     <  2:127479/149‑1 (MQ=255)                                                                                                                ggggACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCAGGGGAGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCATTCCCGGGCGGGAAATGGCCAGCGCGGGAATAGAGCATGc                                     >  3:218785/1‑149 (MQ=255)                                                                                                                ggggACCATGGTCGAGGCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATGc                                     <  1:109294/149‑1 (MQ=255)                                                                                                                          gTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATGCGGATCGAAc                            <  7:265155/148‑1 (MQ=255)                                                                                                                          gTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATGCGGATCGAACt                           <  4:296341/149‑1 (MQ=255)                                                                                                                                    tCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATGCGGATCGAACTGGACAAggtg                 >  7:167425/1‑149 (MQ=255)                                                                                                                                     cACCTCGTAGACAAGGCAAAGGCAATGGCACAGAGTGCAAGCGCCCTGGGTCGTTTTCGGAGAAAAGTCTTCGGCGTACAGCATCGATTGCCAGTGCGGGTAATGTCCAGCGCGGGAATAGAGCATGCGGATCGAACTGGACAAggtg                 <  3:233930/148‑1 (MQ=255)                                                                                                                                      aCCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATg                                      <  7:116341/126‑1 (MQ=255)                                                                                                                                      aCCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATg                                      >  8:116341/1‑126 (MQ=255)                                                                                                                                        cTCGTAGACACGGCCCAGGCCTTGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGGATCTCTTGCCCGGGGGGGTAATGGCCAGCGCGGGAATAGAGCATGCGGATCGAACTGGACAAgg                   <  7:10745/143‑1 (MQ=255)                                                                                                                                        cTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATGCGGATCGAACTGGACAAGGTGGTCa             >  4:55835/1‑149 (MQ=255)                                                                                                                                        cTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGACAGCGCGGGAATAGAGCATGCGGATCGAAATGGACAAggtagatc             >  8:10745/1‑144 (MQ=255)                                                                                                                                             aGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATGCGGATCGAACTGGACAAGGTGGTCACGCTa        >  6:215743/1‑149 (MQ=255)                                                                                                                                              aataggccccatggcgcttgcccgcagtgccatggcctgggccgtgtctacgaggtgaccgaagcgaccatggtccccgacccgtctctgaccatccgtgagcgttagttggcggcgtggccaattgcctggcaagggcagaacctgcg       <  4:233930‑M1/144‑144 (MQ=255)                                                                                                                                               acacGccccagggcgcttgcccgcagtgccatggcctgggccgtgtctacgaggtgaccgaagcgaccatggtccccgacccgtcgctgaccatccgtgagcgtgcggtggcggcgtggccaatggcctggcaagggcagaacctgcgc      <  8:265155‑M1/149‑145 (MQ=255)                                                                                                                                                cacGccccagggcgcttgcccgcagtgccatggcctgggccgtgtctacgaggtgaccgaagcgaccatggtccccgacccgtcgctgaccatccgtgagcgtgcggtggcggcgtggccaatggcctggcgagggcagaacctgcgcg     <  6:135259‑M1/149‑146 (MQ=255)                                                                                                                                                cacGccccagggcgcttgcccgcagtgccatggcctgggccgtgtctacgaggtgaccgaagcgaccatggtccccgacccgtcgctgaccatccgtgagcgtgcggtggcggcgtggccaatggcctggcaagggcagaacctgcgc      >  1:172784‑M1/1‑4 (MQ=255)                                                                                                                                                 acGccccagggcgcttgcccgcagtgccatggcctgggccgtgtctacgaggtgaccgaagcgaccatggtccccgacccgtcgctgaccatccgtgagcgtgcggtggcggcgtggccaatggcctggcaagggcagaacctgcgcg     >  8:11402‑M1/1‑3 (MQ=255)                                                                                                                                                 acGccccagggcgcttgcccgcagtgccatggcctgggccgtgtctacgaggtgaccgaagcgaccatggtccccgacccgtcgctgaccat                                                             <  7:188942‑M1/92‑90 (MQ=255)                                                                                                                                                 acGccccagggcgcttgcccgcagtgccatggcctgggccgtgtctacgaggtgaccgaagcgaccatggtccccgacccgtcgctgaccat                                                             >  8:188942‑M1/1‑3 (MQ=255)                                                                                                                                                 acGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGcgtgtctacgaggtgaccgaagcgaccatggtccccgacccgtcgctgaccatccgtgagcgtgcggtggcggcgtggccaatggcctggcaagggcagaacctgcgcga    <  7:15345‑M2/149‑111 (MQ=255)                                                                                                                                                   ggCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATGCGGATCGAACTGGACAAGGTGGTCACGCTACCCAcc  >  4:126202/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     AGGGATATCGACGTCATAGCCCAGCGTGACCAGGATGTCGCGCAGGTTCTGCCCTTGCCAGGCCATTGGCCACGCCGCCACCGCACGCTCACGGATGGTCAGCGACGGGTCGGGGACCATGGTCGCTTCGGTCACCTCGTAGACACGGCCCAGGCCATGGCACTGCGGGCAAGCGCCCTGGGGCGTGTTCGGAGAAAAGTCTTCGGCGTACAGCATCGCTTGCCCGGGCGGGTAATGGCCAGCGCGGGAATAGAGCATGCGGATCGAACTGGACAAGGTGGTCACGCTACCCACC  >  NC_002947/3476104‑3476398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.