New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3608915 =	42 (0.850)	4 (0.080)	4/248	NT	8.4%	coding (202/2265 nt)	PP_3182	GGDEF domain‑containing protein
	?	NC_002947	3608979 =	47 (0.980)					coding (138/2265 nt)	PP_3182	GGDEF domain‑containing protein

GCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGCCGACAGTGCATTCTGTCGGGCG  >  NC_002947/3608769‑3609057                                                                                                                                                    |                                                                                                                                               cttatcctgatgctctgtgcagcgaccctggcctttctctgggggctgcacgtcacccagaaagccgccgcccgacagaatgcactgtcggccaaggccatcgagcacctgaacctggccagcatcgtgggcgaaaacctccgacagc                                                                                                                                                >  5:43413‑M1/148‑148 (MQ=255)  ttatcctgatgctctgtgcagcgaccctggcctttctctgggggctgcacgtcacccagaaagccgccgcccgacagaatgcactgtcggccaaggccatcgagcacctgaacctggccagcatcgtgggcgaaaacctccgacagCtt                                                                                                                                              <  1:269915‑M1/3‑1 (MQ=255)  cGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTg                                                                                                                                             <  3:293258/149‑1 (MQ=255)   gATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTgg                                                                                                                                            <  3:183540/149‑1 (MQ=255)    atcctgatgctctgtgcagcgaccctggcctttctctgggggctgcacgtcacccagaaagccgccgcccgacagaatgcactgtcggccaaggccatcgagcacctgaacctggccagcatcgtgggcgaaaacctccgacagCTTg                                                                                                                                             >  1:307902‑M1/145‑148 (MQ=255)       aaTGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGgcgc                                                                                                                                         <  2:302129/148‑1 (MQ=255)           tgCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCgcgc                                                                                                                                    <  3:156992/149‑1 (MQ=255)            gCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCt                                                                                                                                   >  7:125857/1‑149 (MQ=255)                cTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGGCCTGAGGTTGCCTTGGCGCCGCGCTTTc                                                                                                                                <  1:4135/149‑1 (MQ=255)                   cAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGT‑CTGAGGTTGCCTTGGCGCCGCGCTTTCAt                                                                                                                              <  1:184585/147‑1 (MQ=255)                      ttGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATgtcgt                                                                                                                         >  5:7521/1‑149 (MQ=255)                           gcAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGATGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTgg                                                                                                                    >  8:6757/1‑149 (MQ=255)                             aaCCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGt                                                                                                                  >  6:166557/1‑149 (MQ=255)                               ccAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTca                                                                                                                >  4:308908/1‑149 (MQ=255)                                        cGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCGGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCa                                                                                                       >  8:113551/1‑149 (MQ=255)                                            aaCTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGc                                                                                                   <  2:168519/149‑1 (MQ=255)                                                           tCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGAc                                                                                    <  1:296629/149‑1 (MQ=255)                                                              gTATGGCTGGCCGCTAGCAGCCGGACTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTATCATGTCGTCCTGGGTCACAAGACCCACCGCCTGCGCGCGGTCGACAAg                                                                                 >  8:22696/1‑149 (MQ=255)                                                                    ctggcCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTc                                                                            <  4:1534/148‑1 (MQ=255)                                                                    ctggcCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTc                                                                            >  3:1534/1‑148 (MQ=255)                                                                    ctggcCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCg                                                                           >  4:139905/1‑149 (MQ=255)                                                                    ctggcCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCg                                                                           >  8:169300/1‑149 (MQ=255)                                                                       gcCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGa                                                                         <  3:308908/148‑1 (MQ=255)                                                                           cTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGttt                                                                    >  2:278471/1‑149 (MQ=255)                                                                           cTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGttt                                                                    >  2:113106/1‑149 (MQ=255)                                                                           acagaatgcactgtcggccaaggccatcgagcacctgaacctggccagcatcgtgggcgaaaacctccgacagCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGt                                                                             <  8:284934‑M1/68‑1 (MQ=255)                                                                           acagaatgcactgtcggccaaggccatcgagcacctgaacctggccagcatcgtgggcgaaaacctccgacagCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGt                                                                             >  7:284934‑M1/74‑141 (MQ=255)                                                                                      tgtcggccaaggccatcgagcacctgaacctggccagcatcgtgggcgaaaacctccgacagCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAg                                                                                 >  3:86946‑M1/63‑126 (MQ=255)                                                                                      tgtcggccaaggccatcgagcacctgaacctggcaagcatcgtgggcgaaaacctccgacagCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAg                                                                                 <  4:86946‑M1/64‑1 (MQ=255)                                                                                          gtcggtcgTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTg                                                     >  6:172989/1‑149 (MQ=255)                                                                                                     aGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAg                                          <  7:113551/149‑1 (MQ=255)                                                                                                       gCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAg                                          >  1:144377/1‑147 (MQ=255)                                                                                                       gCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAg                                          <  2:144377/147‑1 (MQ=255)                                                                                                         tCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGc                                      >  2:208763/1‑149 (MQ=255)                                                                                                           aaGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCt                                     <  7:169300/148‑1 (MQ=255)                                                                                                            aGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCg                                   <  5:166557/149‑1 (MQ=255)                                                                                                                 ttGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGc                              >  4:50447/1‑149 (MQ=255)                                                                                                                        caGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGcc                       <  1:17723/149‑1 (MQ=255)                                                                                                                          gggTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGCCGa                     >  6:236389/1‑149 (MQ=255)                                                                                                                            gTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGCCGACa                   <  7:22696/149‑1 (MQ=255)                                                                                                                             tCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTTGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGCCGACAg                  <  7:6757/149‑1 (MQ=255)                                                                                                                                 ctgcCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGCCGACAGt                 <  3:139905/146‑1 (MQ=255)                                                                                                                                 ctgcCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGCCGACAGTg                <  5:172989/147‑1 (MQ=255)                                                                                                                                   gcCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATg                                >  4:389/1‑129 (MQ=255)                                                                                                                                   gcCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATg                                <  3:389/129‑1 (MQ=255)                                                                                                                                    ccAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGCCGACAGTGCAtt            <  2:175547/148‑1 (MQ=255)                                                                                                                                        gggtGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTGCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGGTCGATGGCCTTGGCCGACAGTGCATTCTGt        <  6:7521/146‑1 (MQ=255)                                                                                                                                        g‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGCCGACAGTGCATTCTGTc       >  1:205009/1‑149 (MQ=255)                                                                                                                                          cTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGCCGACAGTGCATTCTGTCg      >  7:69470/1‑149 (MQ=255)                                                                                                                                            gAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGCCGACAGTGCATTCTGTCggg    >  2:262126/1‑149 (MQ=255)                                                                                                                                              ggTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGCCGACAGTGCATTCTGTCGggcg  >  6:41374/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                               GCGATCAATGTGCCGCTGCAGTTGGCGCAACCAGTCTGCCGGCAACTCGGCGGCCTCATCGGTATGGCTGGCCGCTAGCAGCCGGCCTTGTCGGTCGTACAGGCTCAAGCGCTTGAACACAGGGTCTGCTGCCAGG‑CTGAGGTTGCCTTGGCGCCGCGCTTTCATGTCGTCCTGGGTCACACGACCCACCGCCTGGGCGCGGTCGACAAGCTGTCGGAGGTTTTCGCCCACGATGCTGGCCAGGTTCAGGTGCTCGATGGCCTTGGCCGACAGTGCATTCTGTCGGGCG  >  NC_002947/3608769‑3609057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.