New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3629073 =	29 (0.590)	4 (0.080)	4/246	NT	12.0%	coding (863/1125 nt)	PP_3199	monooxygenase
	?	NC_002947	3629119 =	31 (0.650)					coding (909/1125 nt)	PP_3199	monooxygenase

CCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGCCGGCGTTTCGAGCGCTG  >  NC_002947/3628927‑3629217                                                                                                                                                   |                                                                                                                                                     ccTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATg                                                                                                                                                    >  3:194598/1‑149 (MQ=255)  gatttccttcacacctgccagcagggacatttcgctgatgaacttgcagcgctcgaaacgccggcccatgaaacgctgcaattgcgcgtcgaggctgccacccgcggtgagctcctcggcgagcaccacggcgtcctcaatggccATgc                                                                                                                                                   >  4:184078‑M1/146‑149 (MQ=255)  cTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATgc                                                                                                                                                   >  1:166110/1‑149 (MQ=255)     cGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATgcc‑‑‑‑gc                                                                                                                                            >  2:198544/1‑149 (MQ=255)     cGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATgcc                                                                                                                                                  <  2:285371/147‑1 (MQ=255)           cGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGc                                                                                                                                      <  1:198544/149‑1 (MQ=255)             cacctgccagcagggacatttcgctgatgaacttgcagcgctcgaaacgccggcccatgaaacgctgcaattgcgcgtcgaggctgccacccgcggtgagctcctcggcgagcaccacggcgtcctcaatggccATgc                                                                                                                                                   >  6:26728‑M1/135‑138 (MQ=255)             cacctgccagcagggacatttcgctgatgaacttgcagcgctcgaaacgccggcccatgaaacgctgcaattgcgcgtcgaggctgccacccgcggtgagctcctcggcgagcaccacggcgtcctcaatggccATgc                                                                                                                                                   <  5:26728‑M1/4‑1 (MQ=255)                     gCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTTGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCca                                                                                                                            >  3:256651/1‑149 (MQ=255)                            cggGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTTGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTgg                                                                                                                     <  4:256651/149‑1 (MQ=255)                              ggCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTgggg                                                                                                                   <  6:110128/149‑1 (MQ=255)                               gCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTgggg                                                                                                                   >  5:35774/1‑148 (MQ=255)                                cTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTgggg                                                                                                                   >  4:284078/1‑147 (MQ=255)                                       gCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCCCGCCACACCTggggcaggggg                                                                                                            >  4:38679/1‑147 (MQ=255)                                          aacttgcagcgctcgaaacgccggcccatgaaacgctgcaattgcgcgtcgaggctgccacccgcggtgagctcctcggcgagcaccacggcgtcctcaatggccATGCCTGCCGCCCATGCCACCACGCCACACCTggggcagggggc                                                                                                           >  6:295077‑M1/106‑149 (MQ=255)                                               gcagcgctcgaaacgccggcccatgaaacgctgcaattgcgcgtcgaggctgccacccgcggtgagctcctcggcgagcaccacggcgtcctcaatggccATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATg                                                                                                    >  2:101125‑M1/101‑147 (MQ=255)                                               cgcgAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTggg                                                                                                                    >  6:309160/1‑131 (MQ=255)                                               cgcgAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTggg                                                                                                                    <  5:309160/131‑1 (MQ=255)                                               cgcgAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATgg                                                                                                   <  6:35774/148‑1 (MQ=255)                                               cgcgAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATgg                                                                                                   <  3:284078/148‑1 (MQ=255)                                                   aGCAGATCGTCGACAACGCCGGGGGCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCAtt                                                                                              <  4:194598/149‑1 (MQ=255)                                                         tcgtcgACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGAc                                                                                        >  2:227671/1‑149 (MQ=255)                                                           acgccggcccatgaaacgctgcaattgcgcgtcgaggctgccacccgcggtgagctcctcggcgagcaccacggcgtcctcaatggccATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGggcaggca                                                                                                      >  8:256495‑M1/89‑133 (MQ=255)                                                           acgccggcccatgaaacgctgcaattgcgcgtcgaggctgccacccgcggtgagctcctcggcgagcaccacggcgtcctcaatggccATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGggcaggca                                                                                                      <  7:256495‑M1/45‑1 (MQ=255)                                                                           tCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCgag                                                                      <  2:166110/149‑1 (MQ=255)                                                                                tACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGc                                                                  <  3:78607/148‑1 (MQ=255)                                                                                   aaGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCAc                                                              >  5:79064/1‑149 (MQ=255)                                                                                     gCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTgg                                                                                                                     >  4:230360/1‑92 (MQ=255)                                                                                     gCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTgg                                                                                                                     <  3:230360/92‑1 (MQ=255)                                                                                     gCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACcg                                                            >  7:189394/1‑149 (MQ=255)                                                                                      ccGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACcgc                                                           >  8:106299/1‑149 (MQ=255)                                                                                                        gTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGAcgc                                         >  2:20090/1‑149 (MQ=255)                                                                                                                    tGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCgtg                                                                                  >  4:50936/1‑96 (MQ=255)                                                                                                                    tGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCgtg                                                                                  <  3:50936/96‑1 (MQ=255)                                                                                                                                      ctgctgATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGCCGGCGtt            <  1:227671/148‑1 (MQ=255)                                                                                                                                        gctgATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGc                                 <  3:137198/125‑1 (MQ=255)                                                                                                                                        gctgATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGc                                 >  4:137198/1‑125 (MQ=255)                                                                                                                                         ctgATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGCCGGCGTTTCGa        <  7:106299/149‑1 (MQ=255)                                                                                                                                             tCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGCCGGCGTTTCGAgcgc    >  8:45556/1‑149 (MQ=255)                                                                                                                                               ggggTTGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGCCGGCGTTTCGAGCGCTg  >  3:187470/1‑149 (MQ=255)                                                                                                                                                gggATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTg                                  <  6:89160/116‑1 (MQ=255)                                                                                                                                                gggATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTg                                  >  5:89160/1‑116 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCC‑‑‑‑GCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGCCGGCGTTTCGAGCGCTG  >  NC_002947/3628927‑3629217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.