New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3629073 =	29 (0.590)	4 (0.080)	4/246	NT	12.0%	coding (863/1125 nt)	PP_3199	monooxygenase
	?	NC_002947	3629119 =	31 (0.650)					coding (909/1125 nt)	PP_3199	monooxygenase

CGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTTCATCAGCGAAATGTCCCTGCTGGCAGGTGTGAAGGAAATC  >  NC_002947/3628973‑3629263                                                                                                                                                   |                                                                                                                                                   gcagcgctcgaaacgccggcccatgaaacgctgcaattgcgcgtcgaggctgccacccgcggtgagctcctcggcgagcaccacggcgtcctcaatggccATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATg                                                                                                                                                    >  2:101125‑M1/101‑147 (MQ=255) cgcgAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATgg                                                                                                                                                   <  6:35774/148‑1 (MQ=255) cgcgAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATgg                                                                                                                                                   <  3:284078/148‑1 (MQ=255)     aGCAGATCGTCGACAACGCCGGGGGCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCAtt                                                                                                                                              <  4:194598/149‑1 (MQ=255)           tcgtcgACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGAc                                                                                                                                        >  2:227671/1‑149 (MQ=255)                             tCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCgag                                                                                                                      <  2:166110/149‑1 (MQ=255)                                  tACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGc                                                                                                                  <  3:78607/148‑1 (MQ=255)                                     aaGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCAc                                                                                                              >  5:79064/1‑149 (MQ=255)                                       gCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACcg                                                                                                            >  7:189394/1‑149 (MQ=255)                                        ccGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACcgc                                                                                                           >  8:106299/1‑149 (MQ=255)                                                          gTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGAcgc                                                                                         >  2:20090/1‑149 (MQ=255)                                                                      tGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCgtg                                                                                                                                  >  4:50936/1‑96 (MQ=255)                                                                      tGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCgtg                                                                                                                                  <  3:50936/96‑1 (MQ=255)                                                                                        ctgctgATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGtt                                                          <  1:227671/148‑1 (MQ=255)                                                                                          gctgATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGc                                                                                 >  4:137198/1‑125 (MQ=255)                                                                                          gctgATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGc                                                                                 <  3:137198/125‑1 (MQ=255)                                                                                           ctgATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGa                                                      <  7:106299/149‑1 (MQ=255)                                                                                               tCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAgcgc                                                  >  8:45556/1‑149 (MQ=255)                                                                                                 ggggTTGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTg                                                >  3:187470/1‑149 (MQ=255)                                                                                                  gggATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTg                                                                                  <  6:89160/116‑1 (MQ=255)                                                                                                  gggATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTg                                                                                  >  5:89160/1‑116 (MQ=255)                                                                                                    catgcctgccccctgccccaggtgtggcgtggtggcatgggcggcatGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGc                                               >  2:101125‑M2/48‑147 (MQ=255)                                                                                                      tgcctgccccctgccccaggtgtggcgtggtggcatgggcggcatGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGt                                                           >  8:256495‑M2/46‑133 (MQ=255)                                                                                                      tgcctgccccctgccccaggtgtggcgtggtggcatgggcggcatGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGt                                                           <  7:256495‑M2/88‑1 (MQ=255)                                                                                                       gccccctgccccaggtgtggcgtggtggcatgggcggcaggcatGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGtt                                          >  6:295077‑M2/45‑149 (MQ=255)                                                                                                          gccCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTtcat                                       >  8:5359/1‑149 (MQ=255)                                                                                                             cATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGc‑‑c                                                                <  5:315334/121‑1 (MQ=255)                                                                                                             cATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGc‑‑c                                                                >  6:315334/1‑121 (MQ=255)                                                                                                              aTGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTTCATCAGc                                   >  2:66415/1‑149 (MQ=255)                                                                                                                  caccacGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGc‑‑c                                                                <  8:199203/116‑1 (MQ=255)                                                                                                                  caccacGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGc‑‑c                                                                >  7:199203/1‑116 (MQ=255)                                                                                                                  caccacGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCt                                                 >  1:75595/1‑131 (MQ=255)                                                                                                                  caccacGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCt                                                 <  2:75595/131‑1 (MQ=255)                                                                                                                                  gggcagggggcaggCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTTCATCAGCGAAATGTCCCTGCTGGCAg                <  6:97516/148‑1 (MQ=255)                                                                                                                                   ggcagggggcaggCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTTCATCAGCGAAATGTCCCTGCTGGCAGgt              <  1:20090/149‑1 (MQ=255)                                                                                                                                   ggcagggggcaggCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTTCATCAGCGAAATGTCCCTGCTGGCAGgt              <  1:66415/149‑1 (MQ=255)                                                                                                                                      agggggcaggCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAAATGCAGCGGTTCATGGGCGGTGGCGTTTAGAGCGCTGGAAATTAATAAGCGAAATTTACCAGCTGGCAGgtg             >  1:102209/1‑149 (MQ=255)                                                                                                                                        ggggcaggCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTTCATCAGCGAAATGTCCCTGCTGGCAGGTGTGaa         <  4:187470/149‑1 (MQ=255)                                                                                                                                            caggcaTGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTTCATCAGCGAAATGTCCCTGCTGGCAGGTGTGAAGGa      >  3:131582/1‑148 (MQ=255)                                                                                                                                             aggcaTGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTTCATCAGCGAAATGTCCCTGCTGGCAGGTGTGAAGGaaa    <  4:131582/149‑1 (MQ=255)                                                                                                                                               gcatGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTTCATCAGCGAAATGTCCCTGCTGGCAGgtg             >  6:26728‑M2/5‑138 (MQ=255)                                                                                                                                               gcatGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTTCATCAGCGAAATGTCCCTGCTGGCAGgtg             <  5:26728‑M2/134‑1 (MQ=255)                                                                                                                                               gcatGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTTCATCAGCGAAATGTCCCTGCTGGCAGGTGTGAAGGAAATc  >  4:184078‑M2/5‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATTGCAGCGTTTCATGGGC‑‑CGGCGTTTCGAGCGCTGCAAGTTCATCAGCGAAATGTCCCTGCTGGCAGGTGTGAAGGAAATC  >  NC_002947/3628973‑3629263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.