New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3661203 =	42 (0.850)	5 (0.110)	5/242	NT	11.7%	coding (492/945 nt)	PP_3225	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	3661254 =	36 (0.770)					coding (441/945 nt)	PP_3225	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein

CCAGGACCTGGCGGTCGATCAGGCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGG  >  NC_002947/3661055‑3661346                                                                                                                                                     |                                                                                                                                                ccAGGACCTGGCGGTCGATCAGGCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAgg                                                                                                                                                 >  4:236078/1‑149 (MQ=255) ccAGGACCTGGCGGTCGATCAGGCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAgg                                                                                                                                                 >  2:253885/1‑149 (MQ=255)      aCCTGGCGGTCGATCAGGCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAg                                                                                                                                            <  1:142128/149‑1 (MQ=255)        gtggccgagtttgccctggctttggtgttcgccgccgccaagcaactgcccggtctatgggtcaaggacgccgactggcgcctggccccgctggccccgttgcgtggtcgcaccctgggcatcctgggcttcggcagtatcggcctgag                                                                                                                                          <  8:199252‑M1/8‑5 (MQ=255)        cTGGCGGTCGATCAGGCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGaa                                                                                                                                          <  5:240087/149‑1 (MQ=255)        cTGGCGGTCGATCAGGCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGaa                                                                                                                                          >  3:306979/1‑149 (MQ=255)           gCGGTCGATCAGGCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAAc                                                                                                                                         <  1:253885/147‑1 (MQ=255)            cGGTCGATCAGGCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCg                                                                                                                                      <  4:306979/149‑1 (MQ=255)              gTCGATCAGGCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCg                                                                                                                                      >  4:59913/1‑147 (MQ=255)                 gATCAGGCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGcc                                                                                                                                 >  7:62366/1‑149 (MQ=255)                  aTCAGGCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGccc                                                                                                                                <  8:267505/149‑1 (MQ=255)                    gccctggctttggtgttcgccgccgccaagcaactgcccggtctatgggtcaaggacgccgactggcgcctgaccccgctggccccgttgcgtggtcgcaccctgggcatcctcggcttcggcagtatcGGCCAGAACCCGAAGccc                                                                                                                                <  8:110799‑M1/18‑1 (MQ=255)                       gCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAggg                                                                                                                           >  1:208202/1‑149 (MQ=255)                       gCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAggg                                                                                                                           >  5:313430/1‑149 (MQ=255)                         cACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGACTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGc                                                                                                                          >  5:324487/1‑148 (MQ=255)                            tttggtgttcgccgccgccaagcaactgcccggtctatgggtcaaggacgccgactggcgcctgaccccgctggccccgttgcgtggtcgcaccctgggcatcctcggcttcggcagtatcGGCCAGAACCCGAAGCCCCAGGGCCACg                                                                                                                      <  7:64321‑M1/28‑1 (MQ=255)                            gggTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACg                                                                                                                      <  7:270117/149‑1 (MQ=255)                              gTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGTCTCAGGGCCAGAACCCGAAGCCCCAGCGCACCGGc                                                                                                                    >  8:118973/1‑149 (MQ=255)                                   cGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTgc                                                                                                               <  3:236078/149‑1 (MQ=255)                                    gCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGaa                                                                                                                                          <  7:1341/121‑1 (MQ=255)                                    gCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGaa                                                                                                                                          >  8:1341/1‑121 (MQ=255)                                                 cggcCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTgg                                                                                                 <  6:313430/149‑1 (MQ=255)                                                  caactgcccggtctatgggtcaaggacgccgactggcgcctgaccccgctggccccgttgcgtggtcgcaccctgggcatcctcggcttcggcagtatcGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGc                                                                                                >  8:64321‑M1/100‑149 (MQ=255)                                                   aactgcccggtctatgggtcaaggacgccgactggcgcctgaccccgctggccccgttgcgtggtcgcaccctgggcatcctcggcttcggcagtatcGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGcc                                                                                               >  4:121239‑M1/99‑149 (MQ=255)                                                    ccAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAg                                                                                                                             >  1:150068/1‑118 (MQ=255)                                                    ccAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAg                                                                                                                             <  2:150068/118‑1 (MQ=255)                                                        cccggtctatgggtcaaggacgccgactggcgcctgaccccgctggccccgttgcgtggtcgcaccctgggcatcctcggcttcggcagtatcGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGAt                                                                                            >  7:110799‑M1/94‑147 (MQ=255)                                                           cAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGAGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTga                                                                                       >  5:87413/1‑148 (MQ=255)                                                             gATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACt                                                                                         >  5:201499/1‑145 (MQ=255)                                                             gATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACt                                                                                         <  6:201499/145‑1 (MQ=255)                                                             gATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTCCGATGCCCTGGCCGGGGCGGCTCAGGGCCTGAACCCGAAGCCCCAGGGCCACGCCCTTGCGCGCCAGGCTCTGGCCGATACTGcc                                                                                      >  4:23199/1‑148 (MQ=255)                                                               tGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGaa                                                                                   <  3:59913/149‑1 (MQ=255)                                                               tGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGaa                                                                                   <  7:89809/149‑1 (MQ=255)                                                                 gTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAg                                                                                  <  2:188600/148‑1 (MQ=255)                                                                  tCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGATCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAACCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGcc                                                                                >  4:252253/1‑149 (MQ=255)                                                                      tGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAgg                                                                            <  2:288994/149‑1 (MQ=255)                                                                       gCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGa                                                                           >  3:139146/1‑149 (MQ=255)                                                                             gAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGcc                                                                       >  6:223883/1‑147 (MQ=255)                                                                              aaCAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAg                                                                    <  2:208202/149‑1 (MQ=255)                                                                               aCAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAgg                                                                   >  2:145763/1‑149 (MQ=255)                                                                                   cTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGc                                                               <  6:324487/149‑1 (MQ=255)                                                                                   cTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGc                                                               <  5:223883/149‑1 (MQ=255)                                                                                        gCAGGTCGGCCACAGGTTCAACGACAGGGATGTCTGCGATGCCCTCGCCGGGCCGGCTCAGGGACAGAACCCGAAGCCCAAGGTCCACGGCCTTCCGCGCCAGGATCTCGCCGATACTGCCGAAGCCGACGATGCCCAGGGTGctcccc                                                          >  8:232281/1‑144 (MQ=255)                                                                                         cAGGTCGGCCACAGGTTATACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCAc                                                         <  7:118973/149‑1 (MQ=255)                                                                                                 ccACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACggg                                                 <  1:145763/149‑1 (MQ=255)                                                                                                                   ggATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGgcgc                               <  3:200709/149‑1 (MQ=255)                                                                                                                          tGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCgg                        >  2:249666/1‑149 (MQ=255)                                                                                                                            cGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACgggg                                                <  2:114948/123‑1 (MQ=255)                                                                                                                            cGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACgggg                                                >  1:114948/1‑123 (MQ=255)                                                                                                                                     ggCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGAcc             <  8:62366/149‑1 (MQ=255)                                                                                                                                                 tCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCggg  >  4:231382/1‑148 (MQ=255)                                                                                                                                                   aGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGAc      >  7:253841/1‑142 (MQ=255)                                                                                                                                                   aGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGAc      <  8:253841/142‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                CCAGGACCTGGCGGTCGATCAGGCCACGGGTGGCCGCAGTGAGCGGGGCGGCCAGCACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGG  >  NC_002947/3661055‑3661346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.