New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3661203 =	42 (0.850)	5 (0.110)	5/242	NT	11.7%	coding (492/945 nt)	PP_3225	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	3661254 =	36 (0.770)					coding (441/945 nt)	PP_3225	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein

CACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGAACACCAAAGCCAGGGCAAACTCGGCCAC  >  NC_002947/3661110‑3661394                                                                                                                                                 |                                                                                                                                             cccggtctatgggtcaaggacgccgactggcgcctgaccccgctggccccgttgcgtggtcgcaccctgggcatcctcggcttcggcagtatcGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGAt                                                                                                                                            >  7:110799‑M1/94‑147 (MQ=255)    cAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGAGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTga                                                                                                                                       >  5:87413/1‑148 (MQ=255)      gATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACt                                                                                                                                         >  5:201499/1‑145 (MQ=255)      gATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACt                                                                                                                                         <  6:201499/145‑1 (MQ=255)      gATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTCCGATGCCCTGGCCGGGGCGGCTCAGGGCCTGAACCCGAAGCCCCAGGGCCACGCCCTTGCGCGCCAGGCTCTGGCCGATACTGcc                                                                                                                                      >  4:23199/1‑148 (MQ=255)        tGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGaa                                                                                                                                   <  7:89809/149‑1 (MQ=255)        tGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGaa                                                                                                                                   <  3:59913/149‑1 (MQ=255)          gTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAg                                                                                                                                  <  2:188600/148‑1 (MQ=255)           tCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGATCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAACCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGcc                                                                                                                                >  4:252253/1‑149 (MQ=255)               tGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAgg                                                                                                                            <  2:288994/149‑1 (MQ=255)                gCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGa                                                                                                                           >  3:139146/1‑149 (MQ=255)                      gAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGcc                                                                                                                       >  6:223883/1‑147 (MQ=255)                       aaCAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAg                                                                                                                    <  2:208202/149‑1 (MQ=255)                        aCAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAgg                                                                                                                   >  2:145763/1‑149 (MQ=255)                            cTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGc                                                                                                               <  6:324487/149‑1 (MQ=255)                            cTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGc                                                                                                               <  5:223883/149‑1 (MQ=255)                                 gCAGGTCGGCCACAGGTTCAACGACAGGGATGTCTGCGATGCCCTCGCCGGGCCGGCTCAGGGACAGAACCCGAAGCCCAAGGTCCACGGCCTTCCGCGCCAGGATCTCGCCGATACTGCCGAAGCCGACGATGCCCAGGGTGctcccc                                                                                                          >  8:232281/1‑144 (MQ=255)                                  cAGGTCGGCCACAGGTTATACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCAc                                                                                                         <  7:118973/149‑1 (MQ=255)                                          ccACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACggg                                                                                                 <  1:145763/149‑1 (MQ=255)                                                            ggATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGgcgc                                                                               <  3:200709/149‑1 (MQ=255)                                                                   tGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCgg                                                                        >  2:249666/1‑149 (MQ=255)                                                                     cGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACgggg                                                                                                >  1:114948/1‑123 (MQ=255)                                                                     cGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACgggg                                                                                                <  2:114948/123‑1 (MQ=255)                                                                              ggCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGAcc                                                             <  8:62366/149‑1 (MQ=255)                                                                                          tCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCggg                                                  >  4:231382/1‑148 (MQ=255)                                                                                           atcggccagagcctggcgcgcaaggccgtggccctggggcttcgggttctggccGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCggg                                                  >  7:110799‑M2/55‑147 (MQ=255)                                                                                            aGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGAc                                                      <  8:253841/142‑1 (MQ=255)                                                                                            aGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGAc                                                      >  7:253841/1‑142 (MQ=255)                                                                                              ggccagagcctggcgcgcaaggccgtggccctggggcttcgggttctggccGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGtt                                             >  4:121239‑M2/52‑149 (MQ=255)                                                                                               gccagagcctggcgcgcaaggccgtggccctggggcttcgggttctggccGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTg                                            >  8:64321‑M2/51‑149 (MQ=255)                                                                                                CCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTACTTGACCCATAGACCGGGCAGTTGc                                           >  3:252253‑M1/1‑149 (MQ=255)                                                                                                 CAGAACGCTAAGCCCCTGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCt                                          >  7:232281‑M1/1‑149 (MQ=255)                                                                                                             ccccAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGgcggcggcg                               >  8:151140/1‑148 (MQ=255)                                                                                                              cccAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGGCGAAGCCGAGGATGCCCAGGGTGCGACCACTCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGGAGTTGCTTGGCGGCGGCGaa                             <  4:139146/149‑1 (MQ=255)                                                                                                              cccAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGaa                             >  5:254899/1‑149 (MQ=255)                                                                                                                     cgtggccctggggcttcgggttctggccGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGAACACCaaa                      <  7:64321‑M2/121‑1 (MQ=255)                                                                                                                     ccACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGTGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGAACACCaaa                      <  6:254899/149‑1 (MQ=255)                                                                                                                     ccACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTggcggcggc                                >  3:5155/1‑139 (MQ=255)                                                                                                                     ccACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTggcggcggc                                <  4:5155/139‑1 (MQ=255)                                                                                                                     ccACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGAACACCaaa                      <  7:127552/149‑1 (MQ=255)                                                                                                                     ccACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGAACACCa                        >  8:127552/1‑147 (MQ=255)                                                                                                                       aCGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGAACACCAAAGc                    <  3:231382/149‑1 (MQ=255)                                                                                                                               gggcttcgggttctggccGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGAACACCAAAGCCAGGGc              <  8:110799‑M2/129‑1 (MQ=255)                                                                                                                                   gcCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGAACACCAAAGCCAGGGCAAACTc        >  5:227393/1‑149 (MQ=255)                                                                                                                                      aGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGAACACCAAAGCCAGGGCAAACTCGGc     >  5:247539/1‑149 (MQ=255)                                                                                                                                        gCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGAACACCAAAGCCAGGGCAAGCTCGGCCa   >  3:21862/1‑149 (MQ=255)                                                                                                                                         ctcaggccGATACTGCCGAAGCCCAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGCCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGAACACCAAAGCCAGGGCAAACTCGGCCAc  <  8:199252‑M2/141‑1 (MQ=255)                                                                                                                                                 gATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGt                                              <  1:179017/97‑1 (MQ=255)                                                                                                                                                 gATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGt                                              >  2:179017/1‑97 (MQ=255)                                                                                                                                                 |                                                                                                                                             CACCAGATGGTCGCTGCCGGCGAACAGCTGTCGCAGGTCGGCCACAGGTTCTACGCCAGGGATGTCTGCGATGCCCTGGCCGGGGCGGCTCAGGGCCAGAACCCGAAGCCCCAGGGCCACGGCCTTGCGCGCCAGGCTCTGGCCGATACTGCCGAAGCCGAGGATGCCCAGGGTGCGACCACGCAACGGGGCCAGCGGGGTCAGGCGCCAGTCGGCGTCCTTGACCCATAGACCGGGCAGTTGCTTGGCGGCGGCGAACACCAAAGCCAGGGCAAACTCGGCCAC  >  NC_002947/3661110‑3661394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.