New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3693203 =	34 (0.690)	3 (0.070)	3/236	NT	8.1%	coding (423/1044 nt)	PP_3259	acyl‑CoA dehydrogenase‑related protein
	?	NC_002947	3693283 =	37 (0.810)					coding (343/1044 nt)	PP_3259	acyl‑CoA dehydrogenase‑related protein

CCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTG  >  NC_002947/3693057‑3693349                                                                                                                                                   |                                                                                                                                                   ccTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCa                                                                                                                                                   <  2:300762/148‑1 (MQ=255)  ggctgtgacctggcactggccaagctctatgagggccataccgatgccttggcgatcctggcggaatgcggcgcagcgcaccacgccaacgacggcatctggggcgtgtgggcggcagagccacccgatgcgcgggtccacatcaCAgc                                                                                                                                                 <  6:142078‑M1/4‑1 (MQ=255)  ggctgtgacctggcactggccaagctctatgagggccataccgatgccttggcgatcctggcggaatgcggcgcagcgcaccacgccaacgacggcatctggggcgtgtgggcggcagagccacccgatgcgcgggtccacatcaCAgc                                                                                                                                                 <  6:209879‑M1/4‑1 (MQ=255)   gctgtgacctggcactggccaagctctatgagggccataccgatgccttggcgatcctggcggaatgcggcgcagcgcaccacgccaacgacggcatctggggcgtgtgggcggcagagccacccgatgcgcgggtccacatcaCAgcg                                                                                                                                                <  4:77783‑M1/5‑1 (MQ=255)          tCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGGCTCATCCCAGGCAGTAATGAGCGCGcgatc                                                                                                                                         <  2:680/149‑1 (MQ=255)           cGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGcgatc                                                                                                                                         >  4:27451/1‑148 (MQ=255)             ttGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGcgatcgat                                                                                                                                      >  4:289511/1‑149 (MQ=255)                   gCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCaa                                                                                                                                <  4:210335/149‑1 (MQ=255)                         tCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCAcc                                                                                                                          >  5:125243/1‑149 (MQ=255)                              acTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGaa                                                                                                                      >  7:253833/1‑148 (MQ=255)                                   cGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAg                                                                                                                <  8:269955/149‑1 (MQ=255)                                    ggTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAgg                                                                                                               <  4:5654/149‑1 (MQ=255)                                         tGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTg                                                                                                          <  3:27451/149‑1 (MQ=255)                                           gCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTgg                                                                                                         <  8:253833/148‑1 (MQ=255)                                           gCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGt                                                                                                        <  5:122742/149‑1 (MQ=255)                                           gCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGt                                                                                                        >  6:50442/1‑149 (MQ=255)                                             cATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGCACACCAGGCCTTGGTGc                                                                                                      >  7:106332/1‑149 (MQ=255)                                                 ccAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGt                                                                                                   <  8:153096/148‑1 (MQ=255)                                                   tggcgatcctggcggaatgcggcgcagcgcaccacgccaacgacggcatctggggcgtgtgggcggcagagccacccgatgcgcgggtccacatcaCAg                                                                                                                                                  >  2:56110‑M1/97‑99 (MQ=255)                                                   tggcgatcctggcggaatgcggcgcagcgcaccacgccaacgacggcatctggggcgtgtgggcggcagagccacccgatgcgcgggtccacatcaCAg                                                                                                                                                  <  1:56110‑M1/3‑1 (MQ=255)                                                              gcggaatgcggcgcagcgcaccacgccaacgacggcatctggggcgtgtgggcggcagagccacccgatgcgcgggtccacatcaCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTgg                                                                                     <  2:166859‑M1/64‑1 (MQ=255)                                                                   tCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCTCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGcc                                                                                >  2:210560/1‑149 (MQ=255)                                                                   tCAATGTTCAGGCCCTGGATTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCg                                                                                  >  4:103278/1‑147 (MQ=255)                                                                     aaTGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCaa                                                                                                                                >  5:18925/1‑99 (MQ=255)                                                                     aaTGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCaa                                                                                                                                <  6:18925/99‑1 (MQ=255)                                                                     aaTGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGt                                                                              >  7:28586/1‑149 (MQ=255)                                                                       tGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTcg                                                                            >  6:56250/1‑149 (MQ=255)                                                                             gcgcaccacgccaacgacggcatctggggcgtgtgggcggcagagccacccgatgcgcgggtccacatcaCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCt                                                                      >  5:209879‑M1/71‑149 (MQ=255)                                                                               cccTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCtgt                                                                    <  3:279947/149‑1 (MQ=255)                                                                                  ccacgccaacgacggcatctggggcgtgtgggcggcagagccacccgatgcgcgggtccacatcaCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGAt                                                                 >  1:166859‑M1/66‑149 (MQ=255)                                                                                    gcttggctGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGAt                                                                 <  3:301908/147‑1 (MQ=255)                                                                                                      gATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCggg                                               <  8:28586/147‑1 (MQ=255)                                                                                                      gATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTg                                             <  1:210560/149‑1 (MQ=255)                                                                                                           ccaccaATTGCGGCTGCTTGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGctct                                        >  5:145556/1‑149 (MQ=255)                                                                                                           ccaccaATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGctct                                        >  4:171241/1‑149 (MQ=255)                                                                                                            caccaATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTg                                       <  3:289511/149‑1 (MQ=255)                                                                                                             accaATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTgc                                      >  3:262557/1‑149 (MQ=255)                                                                                                               caATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTgccg                                    >  1:12149/1‑149 (MQ=255)                                                                                                                                 cTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGc                  >  5:90446/1‑149 (MQ=255)                                                                                                                                  tgaTCCCAGGCAGTTATGAGCGCGCGATCGAGCTGCATGTCACGGGAACAGCAGGGGTTGGTGGCGTTGAGACGCTCCTGGTCGGCGTCGCGCGCTGTGATGTGAACCCGCGCATAGGGTGGCTCTGCCGCCCTCACGcc                          <  6:159991/138‑1 (MQ=255)                                                                                                                                  tCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGAACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGAACACGCGCATCGGGTGGCTCTGCCGCCCCCCCGcccagatagg                  >  5:159991/1‑141 (MQ=255)                                                                                                                                             aGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGcccc                        >  7:12966/1‑131 (MQ=255)                                                                                                                                             aGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGcccc                        <  8:12966/131‑1 (MQ=255)                                                                                                                                                 aTCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCgtggtg  <  5:56250/149‑1 (MQ=255)                                                                                                                                                 aTCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCgtggtg  >  3:119248/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CCTGGGGTATCGTTGAACGCCACCTCGACACTGGCGGTAGTGGCCATGCCAACGGCCTGCCAGTGCTCAATGTTCAGGCCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTG  >  NC_002947/3693057‑3693349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.