New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3693203 =	34 (0.690)	3 (0.070)	3/236	NT	8.1%	coding (423/1044 nt)	PP_3259	acyl‑CoA dehydrogenase‑related protein
	?	NC_002947	3693283 =	37 (0.810)					coding (343/1044 nt)	PP_3259	acyl‑CoA dehydrogenase‑related protein

CCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGG  >  NC_002947/3693135‑3693429                                                                                                                                                     |                                                                                                                                                    cccTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCtgt                                                                                                                                                     <  3:279947/149‑1 (MQ=255)    ccacgccaacgacggcatctggggcgtgtgggcggcagagccacccgatgcgcgggtccacatcaCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGAt                                                                                                                                                  >  1:166859‑M1/66‑149 (MQ=255)      gcttggctGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGAt                                                                                                                                                  <  3:301908/147‑1 (MQ=255)                        gATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCggg                                                                                                                                <  8:28586/147‑1 (MQ=255)                        gATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTg                                                                                                                              <  1:210560/149‑1 (MQ=255)                             ccaccaATTGCGGCTGCTTGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGctct                                                                                                                         >  5:145556/1‑149 (MQ=255)                             ccaccaATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGctct                                                                                                                         >  4:171241/1‑149 (MQ=255)                              caccaATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTg                                                                                                                        <  3:289511/149‑1 (MQ=255)                               accaATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTg‑c                                                                                                                      >  3:262557/1‑149 (MQ=255)                                 caATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTg‑ccg                                                                                                                    >  1:12149/1‑149 (MQ=255)                                                   cTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGc                                                                                                  >  5:90446/1‑149 (MQ=255)                                                    tgaTCCCAGGCAGTTATGAGCGCGCGATCGAGCTGCATGTCACGGGAACAGCAGGGGTTGGTGGCGTTGAGACGCTCCTGGTCGGCGTCGCGCGCTGTGATGTGAACCCGCGCATAGGGTGGCTCTG‑CCGCCCTCACGcc                                                                                                          <  6:159991/138‑1 (MQ=255)                                                    tCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGAACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGAACACGCGCATCGGGTGGCTCTG‑CCGCCCCCCCGcccagatagg                                                                                                  >  5:159991/1‑141 (MQ=255)                                                               aGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGcccc                                                                                                        >  7:12966/1‑131 (MQ=255)                                                               aGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGcccc                                                                                                        <  8:12966/131‑1 (MQ=255)                                                                 atcacagcgcgcgacggcgaccaggtgcgtctcaacggcaccaaggcctggtgttccggtgccttgcagatcgatcgcgcgctgTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCgtgg                                                                                    >  1:166859‑M2/85‑149 (MQ=255)                                                                   aTCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCgtggtg                                                                                  <  5:56250/149‑1 (MQ=255)                                                                   aTCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCgtggtg                                                                                  >  3:119248/1‑149 (MQ=255)                                                                      agcgcgcgacggcgaccaggtgcgtctcaacggcaccaaggcctggtgttccggtgccttgcagatcgatcgcgcgctgTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGtgcgc                                                                               >  5:209879‑M2/80‑149 (MQ=255)                                                                              ATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGcgccgc                                                                       >  5:50442‑M1/1‑149 (MQ=255)                                                                                  atcTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTc                                                                   >  1:219276/1‑149 (MQ=255)                                                                                     ccaggtgcgtctcaacggcaccaaggcctggtgttccggtgccttgcagatcgatcgcgcgctgTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGc                                                                <  2:166859‑M2/85‑1 (MQ=255)                                                                                      gCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCTACGTTGGCGTGGTGCGATCCCCCGCAtgcgcc                                                                >  8:56963/1‑143 (MQ=255)                                                                                      gCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGc                                                                >  1:254524/1‑148 (MQ=255)                                                                                       cAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTcc                                                                  <  2:219276/145‑1 (MQ=255)                                                                                             aCCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCgtggt                                                                                   <  8:288437/122‑1 (MQ=255)                                                                                             aCCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCgtggt                                                                                   >  7:288437/1‑122 (MQ=255)                                                                                                      ccAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCAt                                               >  3:77783/1‑149 (MQ=255)                                                                                                       cAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAg                                                                                                      >  5:130300/1‑93 (MQ=255)                                                                                                       cAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAg                                                                                                      <  6:130300/93‑1 (MQ=255)                                                                                                       cAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCaa                                                    >  2:6093/1‑143 (MQ=255)                                                                                                       cAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCaa                                                    <  1:6093/143‑1 (MQ=255)                                                                                                       cAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATc                                              >  5:142078/1‑149 (MQ=255)                                                                                                       cAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATc                                              >  5:213561/1‑149 (MQ=255)                                                                                                             ttGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATg                                        >  5:266613/1‑149 (MQ=255)                                                                                                               ggTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATgg                                       <  6:90446/148‑1 (MQ=255)                                                                                                                   ccGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCt                                   >  2:199351/1‑148 (MQ=255)                                                                                                                   ccGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTc                                  <  3:171241/149‑1 (MQ=255)                                                                                                                    cGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCa                                 <  1:199351/149‑1 (MQ=255)                                                                                                                         agaCGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATagag                            <  2:12149/149‑1 (MQ=255)                                                                                                                          gaCGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGc                           <  6:125243/149‑1 (MQ=255)                                                                                                                              cACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTgg                       <  1:171465/149‑1 (MQ=255)                                                                                                                               aCCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCtt                         >  6:317473/1‑146 (MQ=255)                                                                                                                               aCCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCtt                         <  5:317473/146‑1 (MQ=255)                                                                                                                                       gCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGGGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCa              <  8:106332/149‑1 (MQ=255)                                                                                                                                        ccGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAg             <  2:254524/149‑1 (MQ=255)                                                                                                                                        ccGTCGCGCGCTGTCCTGTGGACCCGCGCACCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAg             <  6:213561/149‑1 (MQ=255)                                                                                                                                                cgctgTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGc     <  4:77783‑M2/144‑1 (MQ=255)                                                                                                                                                 gctgTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGcc    <  6:142078‑M2/145‑1 (MQ=255)                                                                                                                                                 gctgTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGcc    <  6:209879‑M2/145‑1 (MQ=255)                                                                                                                                                  ctgTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCa                                                     <  1:56110‑M2/96‑1 (MQ=255)                                                                                                                                                  ctgTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCa                                                     >  2:56110‑M2/4‑99 (MQ=255)                                                                                                                                                     tgATGTGGTCCCGGCCATGGGGTGGCAGTGCCCGCCAACA‑GCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCgg  <  7:56963/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCCTGGCTTGGCTGTGACAGCTCGATTGCCACCAATTGCGGCTGCTCGGCCTCATCCCAGGCAGTAATCAGCGCGCGATCGATCTGCAAGGCACCGGAACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTG‑CCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGG  >  NC_002947/3693135‑3693429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.