New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3752195 =	47 (0.950)	4 (0.090)	4/240	NT	8.5%	coding (1688/2823 nt)	PP_3316	chaperone‑associated ATPase
	?	NC_002947	3752250 =	42 (0.910)					coding (1633/2823 nt)	PP_3316	chaperone‑associated ATPase

TTCATTGACCGGAATGCCGGTTAGCCGCGAGACGATTTGCGCCACATGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGCCGATAACTTGACGCGGGCGGCAGCCTGATCGAGCAGA  >  NC_002947/3752047‑3752338                                                                                                                                                     |                                                                                                                                                ttCATTGACCGGAATGCCGGTTAGCCGCGAGACGATTTGCGCCACATGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCt                                                                                                                                                 >  7:111927/1‑149 (MQ=255)    aTTGACCGGAATGCCGGTTAGCCGCGAGACGATTTGCGCCACATGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTgcg                                                                                                                                              >  3:153320/1‑149 (MQ=255)    aTTGACCGGAATGCCGGTTAGCCGCGAGACGATTTGCGCCACATGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTgc                                                                                                                                               <  4:14219/148‑1 (MQ=255)          ctgtccgaccgctacgtcagcgcgcgctttctgccggacaaggccatcgatctgctcgatcaggctgccgcccgcgtcaagttatcggcgacggcgcgtccggttgcggtgcaggaaatggagtcggagttgcaccagtTGcgccgc                                                                                                                                          <  4:153826‑M1/8‑1 (MQ=255)           ggAATGCCGGTTAGCCGCGAGACGATTTGCGCCACATGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCAtt                                                                                                                                       <  5:187939/149‑1 (MQ=255)                  cGGTTAGCCGCGAGACGATTTGCGCCACATGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCatat                                                                                                                                >  2:166903/1‑149 (MQ=255)                   ggTTAGCCGCGAGACGATTTGCGCCACATGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATAtt                                                                                                                               <  3:272115/149‑1 (MQ=255)                   ggTTAGCCGCGAGACGATTTGCGCCACATGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATAtt                                                                                                                               <  7:100082/149‑1 (MQ=255)                   ggTTAGCCGCGAGACGATTTGCGCCACATGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTCGCTGATCTGCGCCGCATTGTCATAtt                                                                                                                               <  5:282968/149‑1 (MQ=255)                       aGCCGCGAGACGATTTGCGCCACATGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATAttgctt                                                                                                                           >  7:66942/1‑149 (MQ=255)                        gCCGCGAGACGATTTGCTCCACATGTTCCGGCATGACCTCGGCGCTGCCCGTGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGCGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATAttgctt                                                                                                                           <  2:267255/148‑1 (MQ=255)                                          caacaTGTTCCGCCTTGACCTCTGTGCTGCCCTAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTcc                                                                                                        <  5:323330/147‑1 (MQ=255)                                            acaTGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTg                                                                                                      >  2:284487/1‑149 (MQ=255)                                            acaTGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTg                                                                                                      >  2:17398/1‑149 (MQ=255)                                                 ttCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTcgc                                                                                                 <  2:165846/149‑1 (MQ=255)                                                  tCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCTACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTcgcg                                                                                                >  1:310153/1‑149 (MQ=255)                                                    cGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCgcgg                                                                                               <  3:32559/148‑1 (MQ=255)                                                           aCCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACt                                                                                        <  8:111927/148‑1 (MQ=255)                                                                ggTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTg                                                                                    <  1:17398/147‑1 (MQ=255)                                                                ctcgatcaggctgccgcccgcgtcaagttatcggcgacggcgcgtccggttgcggtgcaggaaatggagtcggagttgcaccagtTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAAc                                                                                         <  4:156566‑M1/57‑1 (MQ=255)                                                                ctcgatcaggctgccgcccgcgtcaagttatcggcgacggcgcgtccggttgcggtgcaggaaatggagtcggagttgcaccagtTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAAc                                                                                         >  3:156566‑M1/86‑142 (MQ=255)                                                                       cccGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGa                                                                           <  2:42734/149‑1 (MQ=255)                                                                          gAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTc                                                                        >  8:77432/1‑149 (MQ=255)                                                                             ccGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCAt                                                                     >  5:303391/1‑149 (MQ=255)                                                                                 gctcgcgctcCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTc                                                                  >  6:134622/1‑148 (MQ=255)                                                                                 gctcgcgctcCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTc                                                                  <  5:134622/148‑1 (MQ=255)                                                                                  ctcgcgctcCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCt                                                                <  3:10406/149‑1 (MQ=255)                                                                                       gctcCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGt                                                                                     >  8:35835/1‑123 (MQ=255)                                                                                       gctcCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGc                                                                                   >  8:294695/1‑125 (MQ=255)                                                                                       gctcCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGc                                                                                   <  7:294695/125‑1 (MQ=255)                                                                                        aagttatcggcgacggcgcgtccggttgcggtgcaggaaatggagtcggagttgcaccagtTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCaa                                                                                          >  1:100918‑M1/62‑117 (MQ=255)                                                                                        aagttatcggcgacggcgcgtccggttgcggtgcaggaaatggagtcggagttgcaccagtTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCaa                                                                                          <  2:100918‑M1/56‑1 (MQ=255)                                                                                          cccACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGc                                                         >  3:71136/1‑148 (MQ=255)                                                                                           ccACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCaa                                                       >  4:278745/1‑149 (MQ=255)                                                                                              ctcctcGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCg                                                    >  3:280833/1‑149 (MQ=255)                                                                                               tcctcGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCgg                                                   >  1:295203/1‑149 (MQ=255)                                                                                               tcctcGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCg                                                    >  1:148212/1‑148 (MQ=255)                                                                                               tcctcGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCg                                                    >  1:153035/1‑148 (MQ=255)                                                                                                 ctcGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGAc                                                 <  2:148212/149‑1 (MQ=255)                                                                                                 ctcGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGAc                                                 <  2:153035/149‑1 (MQ=255)                                                                                                    gACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGAcgcg                                              >  6:206808/1‑149 (MQ=255)                                                                                                    gACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGAcgc                                               <  5:237979/148‑1 (MQ=255)                                                                                                       ccGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTg                                                                                       <  6:26871/105‑1 (MQ=255)                                                                                                        cGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGt                                          <  8:66942/149‑1 (MQ=255)                                                                                                         gctgctTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTc                                         >  7:19471/1‑149 (MQ=255)                                                                                                             ctTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGcc                                      <  5:206808/148‑1 (MQ=255)                                                                                                             ctTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGCCg                                     <  8:19471/149‑1 (MQ=255)                                                                                                                      ggCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCTTATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGCCGATAACTTGa                            >  1:222240/1‑149 (MQ=255)                                                                                                                      ggCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGCCGATAACTTGa                            <  4:280833/149‑1 (MQ=255)                                                                                                                                    cGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGCCGATAACTTGACGCGGGCGGCAGcc              >  2:202543/1‑149 (MQ=255)                                                                                                                                      aCGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGCCGATAACTTGACGCGGGCGGCAGCCt             >  2:312771/1‑148 (MQ=255)                                                                                                                                           cTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGCCGATAACTTGACGCGGGCGGCAGCCTGATc         >  5:215182/1‑147 (MQ=255)                                                                                                                                              gCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGCCGATAACTTGACGCGGGCGGCAGCCTGATCGAg      <  4:71136/147‑1 (MQ=255)                                                                                                                                              gCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGCCGATAACTTGACGCGGGCGGCAGCCTGATCGAGc     <  7:77432/148‑1 (MQ=255)                                                                                                                                              gCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCACAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGCCGATAACTTGACGCGGGCGGCAGCCTGATCGAg      >  6:321644/1‑147 (MQ=255)                                                                                                                                                  aTCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGCCGATAACTTGACGCGGGCGGCAGCCTGATCGAGCAGa  <  1:202543/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                TTCATTGACCGGAATGCCGGTTAGCCGCGAGACGATTTGCGCCACATGTTCCGCCTTGACCTCGGTGCTGCCCGAGCCGCGCTCGCGCTCCCACTCCTCGACCCGCTGCTTGAGTTCGGCCTCCGTGGCTTCGACGCGCTTGCTGATCTGCGCCGCATTGTCATATTGCTTGCGCGAAGCCGCGTAGTCCTGCTCGCGGCGCAACTGGTGCAACTCCGACTCCATTTCCTGCACCGCAACCGGACGCGCCGTCGCCGATAACTTGACGCGGGCGGCAGCCTGATCGAGCAGA  >  NC_002947/3752047‑3752338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.