New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4060960	36 (0.730)	4 (0.080)	4/246	NT	9.7%	intergenic (‑62/‑112)	pgm/PP_3579	phosphoglucomutase/membrane protein
	?	NC_002947	= 4061004	40 (0.840)					intergenic (‑106/‑68)	pgm/PP_3579	phosphoglucomutase/membrane protein

GTGTAATAGGCGGTAAGCAGCCGGGGAATATCGACCAGCACGCTGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCC  >  NC_002947/4060816‑4061108                                                                                                                                                 |                                                                                                                                                     gtgtAATAGGCGGTAAGCAGCCGGGGAATATCGACCAGCACGCTGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTATTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCg                                                                                                                                                  >  5:89476/1‑149 (MQ=255)         ggCGGTAAGCAGCCGGGGAATATCGACCAGCACGCTGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTATTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATgg                                                                                                                                          <  6:89476/149‑1 (MQ=255)            ggTAAGCAGCCGGGGAATATCGACCAGCACGCTGGCCGGAGCCGGCTTGCATGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATggggg                                                                                                                                       >  6:92449/1‑149 (MQ=255)                                      gCACGCTGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATggg                                                                                                                                         >  6:22838/1‑121 (MQ=255)                                      gCACGCTGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATggg                                                                                                                                         <  5:22838/121‑1 (MQ=255)                                      gCACGCTGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACATCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTTCAATGCCGTGCGATGGGTGCATCAAAGAAAACCAAGGCACTGCAg                                                                                                             >  6:203092/1‑149 (MQ=255)                                          gCTGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATaccctgcagggcctggggtttctttgatgcccccatcgcacggca                                                                                                         >  3:150101‑M1/1‑104 (MQ=255)                                          gCTGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTa                                                                                                         >  7:41251‑M2/1‑148 (MQ=255)                                            tGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTatt                                                                                                       <  1:210511‑M2/149‑4 (MQ=255)                                              gCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTattgc                                                                                                     >  1:209187‑M2/1‑144 (MQ=255)                                                cGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATaccctgcagggcctggggtttctttgatgcccccatcgcacggcattgcaa                                                                                                   <  4:150101‑M1/149‑52 (MQ=255)                                                           tgcctgccAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAgg                                                                                                            <  6:261547/129‑1 (MQ=255)                                                           tgcctgcaAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAgg                                                                                                            >  5:261547/1‑129 (MQ=255)                                                              ctgccAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATaccctgcagggcctggggtttctttgatgcccccaccgcacggca                                                                                                         >  6:180058‑M1/1‑84 (MQ=255)                                                              ctgccAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATaccctgcagggcctggggtttctttgatgcccccaccgcacggca                                                                                                         <  5:180058‑M1/129‑46 (MQ=255)                                                              ctgccAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAAccc                                                                                     >  5:254336/1‑149 (MQ=255)                                                                     aGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACg                                                                              >  7:42472/1‑149 (MQ=255)                                                                          tGAGCTTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATTACGGTCTa                                                                         <  5:92449/149‑1 (MQ=255)                                                                              cGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTagag                                                                      >  6:42934/1‑148 (MQ=255)                                                                              cGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCACGCGCAACCCTATGACGGTCTagag                                                                      >  3:56927/1‑148 (MQ=255)                                                                                  aTGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACaa                                                                 <  6:254336/149‑1 (MQ=255)                                                                                  aTGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACaa                                                                 <  8:42472/149‑1 (MQ=255)                                                                                      aaaaaCCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCa                                                             >  8:212511/1‑149 (MQ=255)                                                                                             tCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCt                                                      >  4:297278/1‑149 (MQ=255)                                                                                             tCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATAACGGTCTAGAGTACAAGCCATACCCCt                                                      >  4:124885/1‑149 (MQ=255)                                                                                                aGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGTGTATTTCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTtgt                                                   <  7:13116/149‑1 (MQ=255)                                                                                                aGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTAt                                                                                  <  1:110341/118‑1 (MQ=255)                                                                                                aGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTAt                                                                                  >  2:110341/1‑118 (MQ=255)                                                                                                    cAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATAc                                                          <  4:187966/138‑1 (MQ=255)                                                                                                    cAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATAc                                                          >  3:187966/1‑138 (MQ=255)                                                                                                      aCGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGa                                             <  3:297278/149‑1 (MQ=255)                                                                                                      aCGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATAACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGa                                             <  3:124885/149‑1 (MQ=255)                                                                                                             ttggtgttggAACGTGCAGTGTAATGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAACCCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACACTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCa                                      >  4:220414/1‑149 (MQ=255)                                                                                                               ggtgttggAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATg                                    >  2:262836/1‑149 (MQ=255)                                                                                                                   ttggAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTa                                                                         <  4:290285/108‑1 (MQ=255)                                                                                                                   ttggAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTa                                                                         >  3:290285/1‑108 (MQ=255)                                                                                                                   ttggAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCtt                                >  5:98843/1‑149 (MQ=255)                                                                                                                      gAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTcc                             <  7:212511/149‑1 (MQ=255)                                                                                                                      gAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTc                              <  5:42934/148‑1 (MQ=255)                                                                                                                       aaCGTGCAGTGTACTGAGAGTTGCAATGCCGTTCGATTGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCa                            <  5:203092/149‑1 (MQ=255)                                                                                                                        aCGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTtgt                                                   <  4:206633/125‑1 (MQ=255)                                                                                                                        aCGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTtgt                                                   >  3:206633/1‑125 (MQ=255)                                                                                                                        aCGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCAt                           >  7:40089/1‑149 (MQ=255)                                                                                                                                    cTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGc               >  3:307646/1‑149 (MQ=255)                                                                                                                                           ttGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTattgcaactctcagtacactgcacgttccaacaccaacatccgttgaactcgaggtttttgcatgacgctcagtcctttggcaggcaagccggctccg        <  4:150101‑M2/149‑99 (MQ=255)                                                                                                                                             gCAATaccctgcagggcctggggtttctttgatgcccccatcgcacggcattgcaactctcagtacactgcacgttccaacaccaacatccgttgaactcgaggtttttgcatgacgctcagtcctttggcaggcaagccggctccggc      >  1:209187‑M1/1‑5 (MQ=255)                                                                                                                                               aaTaccctgcagggcctggggtttctttgatgcccccatcgcacggcattgcaactctcagtacactgcacgttccaacaccaacatccgttgaactcgaggtttttgcatgacgctcagtcctttggcaggcaagccggctccggcca    <  1:210511‑M1/149‑147 (MQ=255)                                                                                                                                               aaTGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTc     <  7:106982/148‑1 (MQ=255)                                                                                                                                               aaTGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTc     >  8:106982/1‑148 (MQ=255)                                                                                                                                                 taccctgcagggcctggggtttctttgatgcccccatcgcacggcattgcaactctcagtacactgcacgttccaacaccaacatccgttgaactcgaggtttttgcatgacgctcagtcctttggcaggcaagccggctccggccagc  >  7:41251‑M1/1‑1 (MQ=255)                                                                                                                                                 tGCCGTGCGGTGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTattgcaactctcagtacactgcacgttccaacaccaacatccgttgaactcgaggtttttgcatgacgctcagtcctttggcag                      >  6:180058‑M2/1‑45 (MQ=255)                                                                                                                                                 tGCCGTGCGGTGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTattgcaactctcagtacactgcacgttccaacaccaacatccgttgaactcgaggtttttgcatgacgctcagtcctttggcag                      <  5:180058‑M2/129‑85 (MQ=255)                                                                                                                                                 tGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTattgcaactctcagtacactgcacgttccaacaccaacatccgttgaactcgaggtttttgcatgacgctcagtcctttggcaggcaagccggctccggccagc  >  3:150101‑M2/1‑45 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GTGTAATAGGCGGTAAGCAGCCGGGGAATATCGACCAGCACGCTGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCC  >  NC_002947/4060816‑4061108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.