New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4060960	36 (0.730)	4 (0.080)	4/246	NT	9.7%	intergenic (‑62/‑112)	pgm/PP_3579	phosphoglucomutase/membrane protein
	?	NC_002947	= 4061004	40 (0.840)					intergenic (‑106/‑68)	pgm/PP_3579	phosphoglucomutase/membrane protein

GCTGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTCGCCGCTGCAGTCGGCCTCGCTGGCGCCTG  >  NC_002947/4060857‑4061145                                                                                                                                                    |                                                                                                                                              gCTGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTa                                                                                                                                              >  7:41251‑M2/1‑148 (MQ=255)   tGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTatt                                                                                                                                            <  1:210511‑M2/149‑4 (MQ=255)     gCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTattgc                                                                                                                                          >  1:209187‑M2/1‑144 (MQ=255)                     ctgccAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAAccc                                                                                                                          >  5:254336/1‑149 (MQ=255)                            aGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACg                                                                                                                   >  7:42472/1‑149 (MQ=255)                                 tGAGCTTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATTACGGTCTa                                                                                                              <  5:92449/149‑1 (MQ=255)                                     cGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTagag                                                                                                           >  6:42934/1‑148 (MQ=255)                                     cGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCACGCGCAACCCTATGACGGTCTagag                                                                                                           >  3:56927/1‑148 (MQ=255)                                         aTGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACaa                                                                                                      <  8:42472/149‑1 (MQ=255)                                         aTGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACaa                                                                                                      <  6:254336/149‑1 (MQ=255)                                             aaaaaCCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCa                                                                                                  >  8:212511/1‑149 (MQ=255)                                                    tCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCt                                                                                           >  4:297278/1‑149 (MQ=255)                                                    tCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATAACGGTCTAGAGTACAAGCCATACCCCt                                                                                           >  4:124885/1‑149 (MQ=255)                                                       aGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGTGTATTTCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTtgt                                                                                        <  7:13116/149‑1 (MQ=255)                                                       aGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTAt                                                                                                                       <  1:110341/118‑1 (MQ=255)                                                       aGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTAt                                                                                                                       >  2:110341/1‑118 (MQ=255)                                                           cAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATAc                                                                                               <  4:187966/138‑1 (MQ=255)                                                           cAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATAc                                                                                               >  3:187966/1‑138 (MQ=255)                                                             aCGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGa                                                                                  <  3:297278/149‑1 (MQ=255)                                                             aCGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATAACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGa                                                                                  <  3:124885/149‑1 (MQ=255)                                                                    ttggtgttggAACGTGCAGTGTAATGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAACCCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACACTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCa                                                                           >  4:220414/1‑149 (MQ=255)                                                                      ggtgttggAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATg                                                                         >  2:262836/1‑149 (MQ=255)                                                                          ttggAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTa                                                                                                              >  3:290285/1‑108 (MQ=255)                                                                          ttggAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTa                                                                                                              <  4:290285/108‑1 (MQ=255)                                                                          ttggAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCtt                                                                     >  5:98843/1‑149 (MQ=255)                                                                             gAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTcc                                                                  <  7:212511/149‑1 (MQ=255)                                                                             gAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTc                                                                   <  5:42934/148‑1 (MQ=255)                                                                              aaCGTGCAGTGTACTGAGAGTTGCAATGCCGTTCGATTGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCa                                                                 <  5:203092/149‑1 (MQ=255)                                                                               aCGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTtgt                                                                                        >  3:206633/1‑125 (MQ=255)                                                                               aCGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTtgt                                                                                        <  4:206633/125‑1 (MQ=255)                                                                               aCGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCAt                                                                >  7:40089/1‑149 (MQ=255)                                                                                           cTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGc                                                    >  3:307646/1‑149 (MQ=255)                                                                                                  ttGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTattgcaactctcagtacactgcacgttccaacaccaacatccgttgaactcgaggtttttgcatgacgctcagtcctttggcaggcaagccggctccg                                             <  4:150101‑M2/149‑99 (MQ=255)                                                                                                      aaTGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTc                                          <  7:106982/148‑1 (MQ=255)                                                                                                      aaTGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTc                                          >  8:106982/1‑148 (MQ=255)                                                                                                        tGCCGTGCGGTGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTattgcaactctcagtacactgcacgttccaacaccaacatccgttgaactcgaggtttttgcatgacgctcagtcctttggcag                                                           >  6:180058‑M2/1‑45 (MQ=255)                                                                                                        tGCCGTGCGGTGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTattgcaactctcagtacactgcacgttccaacaccaacatccgttgaactcgaggtttttgcatgacgctcagtcctttggcag                                                           <  5:180058‑M2/129‑85 (MQ=255)                                                                                                        tGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTattgcaactctcagtacactgcacgttccaacaccaacatccgttgaactcgaggtttttgcatgacgctcagtcctttggcaggcaagccggctccggccagc                                       >  3:150101‑M2/1‑45 (MQ=255)                                                                                                                gATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTc                               <  6:98843/149‑1 (MQ=255)                                                                                                                gATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTc                               >  5:119795/1‑149 (MQ=255)                                                                                                                       gCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTCGCCGCTg                        <  8:40089/149‑1 (MQ=255)                                                                                                                            aaaGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTCGCCGCTGCAGTc                   >  5:306961/1‑149 (MQ=255)                                                                                                                                  aCCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTCGCCGCTGCAGTCGGCCTc             >  7:73440/1‑149 (MQ=255)                                                                                                                                    cccAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTCGCCGCTGCAGTCGGCCTCg            >  4:164786/1‑148 (MQ=255)                                                                                                                                    cccAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTCGCCGCTGCAGTCGGCCTCGc           >  3:278581/1‑149 (MQ=255)                                                                                                                                      cAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACCCGCCATACCCCTTGGGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTCGCCGCTGCAGTCGGCCTCGCTg         <  3:220414/149‑1 (MQ=255)                                                                                                                                               cAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTTGATTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTCGCCGCTGCAGTCGGCCTCGCTGGCGCCTg  <  1:262836/147‑1 (MQ=255)                                                                                                                                                    tATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTCGCCGCTGCAGTCGGCCTCGCTGGCGCCt   <  8:199824/141‑1 (MQ=255)                                                                                                                                                    tATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTCGCCGCTGCAGTCGGCCTCGCTGGCGCCt   >  7:199824/1‑141 (MQ=255)                                                                                                                                                    |                                                                                                                                              GCTGGCCGGAGCCGGCTTGCCTGCCAAAGGACTGAGCGTCATGCAAAAACCTCGAGTTCAACGGATGTTGGTGTTGGAACGTGCAGTGTACTGAGAGTTGCAATGCCGTGCGATGGGGGCATCAAAGAAACCCCAGGCCCTGCAGGGTATTGCGCATCCCGCCCAACCCTATGACGGTCTAGAGTACAAGCCATACCCCTTGTGAACGAGGCTCCATGGCTTTCCATCGTCTGACCCGCACCCACCCTCGCCTGAGCCTCGCCGCTGCAGTCGGCCTCGCTGGCGCCTG  >  NC_002947/4060857‑4061145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.