New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4083542	42 (0.850)	4 (0.080)	3/250	NT	10.0%	coding (541/753 nt)	PP_3593	amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 4083578	31 (0.640)					coding (577/753 nt)	PP_3593	amino acid ABC transporter substrate‑binding protein

CGTCGGTGCGCAGTCTTCCTCTACCCAGGCCATCTACGCCGAAGACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATGCCGCCATCGCTGTGCGCAAGGACGACGAAGCCCTGCGCCAGCGCCTGAATACCGCGCTGCAACAGAT  >  NC_002947/4083394‑4083690                                                                                                                                                     |                                                                                                                                                     cGTCGGTGCGCAGTCTTCCTCTACCCAGGCCATCTACGCCGAAGACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAAT                                                                                                                                                      >  6:65433‑M1/1‑149 (MQ=255)  gTCGGTGCGCAGTCTTCCTCTACCCAGGCCATCTACGCCGAAGACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAAtt                                                                                                                                                     >  3:200986/1‑149 (MQ=255)          gcAGTCTTCCTCTACCCAGGCCATCTACGCCGAAGACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCg                                                                                                                                                 <  1:125228/145‑1 (MQ=255)            aGTCTTCCTCTACCCAGGCCATCTACGCCGAAGACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCAc                                                                                                                                           <  8:143986/149‑1 (MQ=255)                  ccTCTACCCAGGCCATCTACGCCGAAGACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAATGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGt                                                                                                                                       <  1:286795/147‑1 (MQ=255)                  ccTCTACCCAGGCCATCTACGCCGAAGACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAg                                                                                                                                        <  3:176021/146‑1 (MQ=255)                      tACCCAGGCCATCTACGCCGAAGACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGAt                                                                                                                                   <  2:286526/147‑1 (MQ=255)                        cgcAGGCGATCTACGGAGAAGACGTGTACGGAAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGaa                                                                                                                                <  8:146832/146‑1 (MQ=255)                         ccAGGCCATCTACGCCGAAGACGTGTACGGCAAGGCCCGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAAc                                                                                                                               >  1:216707/1‑148 (MQ=255)                          cAGGCCATCTACGCCGAAGACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACACGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTCATTGCCGACAAATTCCCGCTGCACCAGTGGATGAACaa                                                                                                                             >  1:91499/1‑149 (MQ=255)                             gCCATCTCCGCCGAAGCGGTGTACGGAAAGGCCGGTGCCGACGTGAAACTGTACCCGACCTTGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGaa                                                                                                                          <  4:139829/149‑1 (MQ=255)                                   tACGCCGAAGACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAAcggcgg                                                                                                                    <  4:261008/149‑1 (MQ=255)                                      gCCGAAGACGTGTACGGCAAGGCCGGTGCCGACGGGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGa                                                                                                                 <  8:23010‑M2/149‑2 (MQ=255)                                          aaGACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATtgc                                                                                                             <  5:65433/149‑1 (MQ=255)                                            gACGTGTACGGCATGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATccccgccgttcttgttcatccactcgtgcagcgggaatttgtc                                                                                                           <  3:188399‑M1/149‑44 (MQ=255)                                            gACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATtcccgccgttcttgttcatccactcgtgcagcgggaatttgtc                                                                                                           <  5:281710‑M1/149‑44 (MQ=255)                                                 gtACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGc                                                                                                                                                >  7:43842/1‑107 (MQ=255)                                                 gtACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGc                                                                                                                                                <  8:43842/107‑1 (MQ=255)                                                    cGGCATGGCGGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATcc                                                                                                   <  2:91499/149‑1 (MQ=255)                                                     ggCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATtg                                                                                                              >  1:4090/1‑137 (MQ=255)                                                     ggCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATtg                                                                                                              <  2:4090/137‑1 (MQ=255)                                                      gCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAAcggcgg                                                                                                                    >  7:76955/1‑130 (MQ=255)                                                      gCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAAcggcgg                                                                                                                    <  8:76955/130‑1 (MQ=255)                                                       cAAGGCCGGTGCCGTCGTGAAACTGTACCCGCCCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTg                                                                                                <  4:200986/149‑1 (MQ=255)                                                       cAAGGCCGGTGCCGACGGGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTg                                                                                                <  7:23010/149‑1 (MQ=255)                                                                     aCGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGa                                                                                   >  1:24492/1‑148 (MQ=255)                                                                            aCTGTAACCGACCCTTGTCGAAGCCAACGCTGAGCTGTCGGCCGGCCGCCTGGACGGCTTGAATGCGGACAAAATCCCTCTGCACGAGTGGATTAACAAGAAAGGCGGGGATTGCTGGAAGATCCTTGGCGACGTGGCGGACACCaatg                                                                           <  8:126503/149‑3 (MQ=255)                                                                             cTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGc                                                                          >  7:69285/1‑149 (MQ=255)                                                                               gTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCGAGGcc                                                                         >  7:248724/1‑148 (MQ=255)                                                                                        cATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATccccgccgttcttgttcatccactcgtgcagcgggaatttgtcg                                                                                                          >  8:43612‑M1/1‑62 (MQ=255)                                                                                        cATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATccccgccgttcttgttcatccactcgtgcagcgggaatttgtcg                                                                                                          <  7:43612‑M1/106‑45 (MQ=255)                                                                                        cATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGAGGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGCCGTGGCGGACACCAAGGCCGCTgcggccc                                                               >  2:318255/1‑148 (MQ=255)                                                                                          tGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCAc                                                                                                                                           <  8:195483/71‑1 (MQ=255)                                                                                          tGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCAc                                                                                                                                           <  8:190904/71‑1 (MQ=255)                                                                                          tGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCAc                                                                                                                                           >  7:190904/1‑71 (MQ=255)                                                                                          tGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCAc                                                                                                                                           >  7:195483/1‑71 (MQ=255)                                                                                           ggACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATGCCGCCATCg                                                            >  1:194048/1‑149 (MQ=255)                                                                                            gACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATGCCGCCATCGc                                                           >  4:170420/1‑149 (MQ=255)                                                                                              cGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCGAGGCCGATGCCGCCATCGCtg                                                         <  8:248724/149‑1 (MQ=255)                                                                                                    cAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATGCCGCCATCGCTGTgcgc                                                    >  7:216737/1‑148 (MQ=255)                                                                                                     aaCGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATGCCGCCATCGCTGTGCGCaa                                                  <  3:170420/149‑1 (MQ=255)                                                                                                          aGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCg                                                                                     >  6:204935/1‑109 (MQ=255)                                                                                                          aGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCg                                                                                     <  5:204935/109‑1 (MQ=255)                                                                                                          aGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATGCCGCCATCGCTGTGCGCAAGgacg                                             <  2:216707/149‑1 (MQ=255)                                                                                                                 gcggcCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATGCCGCCATCGCTGTGCGCAAGGACGACGAAGc                                      >  7:151927/1‑149 (MQ=255)                                                                                                                         ccgccTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATGCCGCCATCGCTGTGCGCAAGGACGACGAAGCCCTGCGcc                              <  8:69285/149‑1 (MQ=255)                                                                                                                            ccTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATGCCGCCATCGCTGTGCGCAAGGACGACGAAGCCCTGCGCCAgc                           <  8:151927/149‑1 (MQ=255)                                                                                                                             ttGGTCGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATgccg                                                                  <  2:230017/108‑1 (MQ=255)                                                                                                                             cTGGACGGCGTGATTGCCGACAAATTCACGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATgccg                                                                  >  1:230017/1‑109 (MQ=255)                                                                                                                                              cGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGatttgtcggcaatcacgccgtccaggcggccggccgccaggtctgcgttggcttcgtccatg                                                    <  7:43612‑M2/106‑63 (MQ=255)                                                                                                                                              cGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGatttgtcggcaatcacgccgtccaggcggccggccgccaggtctgcgttggcttcgtccatg                                                    >  8:43612‑M2/1‑44 (MQ=255)                                                                                                                                              cGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATGCCGCCATCGCTGTGCGCAAGGACGACGAAGCCCTGCGCCAGCGCCTGAATACCGCGCTg          >  4:43987/1‑148 (MQ=255)                                                                                                                                               gACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGatttgtcggcaatcacgccgtccaggcggccggccgccaggtctgcgttggcttcgtccatggtcgggtacagtttcacgtcggcaccggccatgccgtacacgtc        <  3:188399‑M2/149‑107 (MQ=255)                                                                                                                                               gACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGAatttgtcggcaatcacgccgtccaggcggccggccgccaggtctgcgttggcttcgtccatggtcgggtacagtttcacgtcggcaccggccttgccgtacacgtc        <  5:281710‑M2/149‑107 (MQ=255)                                                                                                                                                  aaaTTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCCATGCCGCCATCGCTGTGCGCAAGGACGACGAAGCCCTGCGCCAGCGCCTGAATACCGCGCTGCaa       >  8:105797/1‑147 (MQ=255)                                                                                                                                                     ttCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATGCCGCCATCGCTGTGCGCAAGGACGACGAAGCCCTGCGCCAGCGCCTGAATACCGCGCTGCAACAGAt  <  2:24492/149‑1 (MQ=255)                                                                                                                                                     tccccgccgttcttgttcatccactcgtgcagcgggaatttgtcggcaatcacgccgtccaggcggccggccgccaggtctgcgttggcttcgtccatggtcgggtacagtttcccgtcggcaccggccttgccgtacacgtcttcggc  <  8:23010‑M1/149‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CGTCGGTGCGCAGTCTTCCTCTACCCAGGCCATCTACGCCGAAGACGTGTACGGCAAGGCCGGTGCCGACGTGAAACTGTACCCGACCATGGACGAAGCCAACGCAGACCTGGCGGCCGGCCGCCTGGACGGCGTGATTGCCGACAAATTCCCGCTGCACGAGTGGATGAACAAGAACGGCGGGGATTGCTGCAAGATCCTTGGCGACGTGGCGGACACCAAGGCCGATGCCGCCATCGCTGTGCGCAAGGACGACGAAGCCCTGCGCCAGCGCCTGAATACCGCGCTGCAACAGAT  >  NC_002947/4083394‑4083690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.