New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5174206 = | 54 (1.090) | 3 (0.060) | 3/244 | NT | 5.9% | coding (774/1689 nt) | fadD‑II | long‑chain‑fatty acid‑‑CoA ligase |
? | NC_002947 | 5174263 = | 45 (0.960) | coding (717/1689 nt) | fadD‑II | long‑chain‑fatty acid‑‑CoA ligase |
CACTTGCCCAGCTCCTTGATGAAGCCGGGAATATCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTG > NC_002947/5174063‑5174343 | cACTTGCCCAGCTCCTTGATGAAGCCGGGAATATCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGcc > 8:202289/1‑149 (MQ=255) cgcgagggccgcgggctgtcgcccaaaccggtgtcgctgaacctcgatgacatcgcggtgctgcagtacaccggcggcaccaccggcctggccaagggcgccatgctcacccatggcaacctggtggccaacatgctgcaagtgCTGGc > 4:139916‑M1/145‑149 (MQ=255) aCTTGCCCAGCTCCTTGATGAAGCCGGGAATATCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCg < 2:94697/149‑1 (MQ=255) cAGCTCCTTGATGAAGCCGGGAATATCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTca < 7:202289/149‑1 (MQ=255) aaTATCCCGCGGGTTGGTAATGAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGTCAGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCggg < 1:94840/149‑1 (MQ=255) tatCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCgggg > 8:259046/1‑146 (MQ=255) tatCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCgggg < 7:259046/146‑1 (MQ=255) tCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGtg > 1:277208/1‑149 (MQ=255) ccGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGACGTTGAGCTCCTTCTGCGGATGGGGGGCCtgct > 2:125395/1‑149 (MQ=37) gcgGGTTGGTAATCCGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGtgctgc < 7:47343/149‑1 (MQ=255) tAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAg < 2:277208/149‑1 (MQ=255) aaTCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAgg > 2:130693/1‑149 (MQ=255) aGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCa < 7:104442/148‑1 (MQ=255) caTTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCgag > 1:36462/1‑134 (MQ=255) caTTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCgag < 2:36462/134‑1 (MQ=255) aTTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTGCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACtt > 1:310695/1‑149 (MQ=255) aTGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTgc < 2:305865/148‑1 (MQ=255) ctgcagtacaccggcggcaccaccggcctggccaagggcgccatgctcacccatggcaacctggtggccaacatgctgcaagtgCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTgca > 1:179557‑M1/85‑149 (MQ=255) tgcagtacaccggcggcaccaccggcctggccaagggcgccatgctcacccatggcaacctggtggccaacatgctgcaagtgCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGc > 8:236310‑M1/84‑137 (MQ=255) tgcagtacaccggcggcaccaccggcctggccaagggcgccatgctcacccatggcaacctggtggccaacatgctgcaagtgCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGc < 7:236310‑M1/54‑1 (MQ=255) ttGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTcagc < 3:6111/96‑1 (MQ=255) ttGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTcagc > 4:6111/1‑96 (MQ=255) cGGTGACCATCATGCACCTGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTg < 4:189407/149‑1 (MQ=255) catcatGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATc < 2:287031/99‑1 (MQ=255) catcatGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATc > 1:287031/1‑99 (MQ=255) catcatGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTCCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGccac > 5:272323/1‑147 (MQ=255) tgcacatgcaGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTg < 4:189159/149‑1 (MQ=255) atgcaGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAg < 2:45332/111‑1 (MQ=255) atgcaGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAg > 1:45332/1‑111 (MQ=255) tgcaGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATgg < 2:162216/149‑1 (MQ=255) gcaGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATggg > 1:85837/1‑149 (MQ=255) aGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTc < 6:34038/77‑1 (MQ=255) aGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTc > 5:34038/1‑77 (MQ=255) gTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGt > 7:23525/1‑147 (MQ=255) gTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGa > 7:239373/1‑149 (MQ=255) cgGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATg < 1:130693/149‑1 (MQ=255) aaGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGcc < 1:125395/149‑1 (MQ=255) aaGGCATACATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTACTGCCCGTCCTTCAGCAGCTACTGCCCATCGGGGCAGTCCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTCGCCACCAGGTTGCCATGGGTGACCATGGCGcc > 6:102439/1‑149 (MQ=255) aTAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGc < 4:99294/114‑1 (MQ=255) aTAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGc > 3:99294/1‑114 (MQ=255) aTAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTgg > 6:240163/1‑149 (MQ=255) aTAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTgg > 2:107818/1‑149 (MQ=255) aTGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAg > 7:26548/1‑149 (MQ=255) tgt‑‑gGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAgg > 7:81073/1‑116 (MQ=255) tgt‑‑gGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAgg < 8:81073/116‑1 (MQ=255) ggTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCg > 7:62776/1‑149 (MQ=255) gTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGGGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCgg < 5:240163/149‑1 (MQ=255) tACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggt < 7:85785/149‑1 (MQ=255) tACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggt < 8:23525/149‑1 (MQ=255) tACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggt < 8:239373/149‑1 (MQ=255) tACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggt < 8:26548/149‑1 (MQ=255) aCAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggtg > 3:171178/1‑149 (MQ=255) gcggcagcggcGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGgtggtg > 3:24581/1‑149 (MQ=255) gcggcgCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGccgccg < 2:85837/149‑1 (MQ=255) ggcgCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCTTGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt < 4:24581/149‑1 (MQ=255) tcatcaCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt > 3:230607/1‑142 (MQ=255) tcatcaCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTg > 7:133821/1‑148 (MQ=255) tcagcaCGTCCAGGCCGTCCTTCAGCCGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt < 4:230607/142‑1 (MQ=255) aCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt < 7:112415/137‑1 (MQ=255) aCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt > 8:112415/1‑137 (MQ=255) | CACTTGCCCAGCTCCTTGATGAAGCCGGGAATATCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTG > NC_002947/5174063‑5174343 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |