New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5174206 =54 (1.090)3 (0.060) 3/244 NT 5.9% coding (774/1689 nt) fadD‑II long‑chain‑fatty acid‑‑CoA ligase
?NC_002947 5174263 = 45 (0.960)coding (717/1689 nt) fadD‑II long‑chain‑fatty acid‑‑CoA ligase

CACTTGCCCAGCTCCTTGATGAAGCCGGGAATATCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTG  >  NC_002947/5174063‑5174343
                                                                                                                                                 |                                                                                                                                         
cACTTGCCCAGCTCCTTGATGAAGCCGGGAATATCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGcc                                                                                                                                      >  8:202289/1‑149 (MQ=255)
 cgcgagggccgcgggctgtcgcccaaaccggtgtcgctgaacctcgatgacatcgcggtgctgcagtacaccggcggcaccaccggcctggccaagggcgccatgctcacccatggcaacctggtggccaacatgctgcaagtgCTGGc                                                                                                                                       >  4:139916‑M1/145‑149 (MQ=255)
 aCTTGCCCAGCTCCTTGATGAAGCCGGGAATATCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCg                                                                                                                                     <  2:94697/149‑1 (MQ=255)
        cAGCTCCTTGATGAAGCCGGGAATATCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTca                                                                                                                              <  7:202289/149‑1 (MQ=255)
                             aaTATCCCGCGGGTTGGTAATGAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGTCAGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCggg                                                                                                           <  1:94840/149‑1 (MQ=255)
                               tatCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCgggg                                                                                                          >  8:259046/1‑146 (MQ=255)
                               tatCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCgggg                                                                                                          <  7:259046/146‑1 (MQ=255)
                                 tCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGtg                                                                                                     >  1:277208/1‑149 (MQ=255)
                                   ccGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGACGTTGAGCTCCTTCTGCGGATGGGGGGCCtgct                                                                                                   >  2:125395/1‑149 (MQ=37)
                                     gcgGGTTGGTAATCCGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGtgctgc                                                                                                 <  7:47343/149‑1 (MQ=255)
                                              tAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAg                                                                                        <  2:277208/149‑1 (MQ=255)
                                               aaTCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAgg                                                                                       >  2:130693/1‑149 (MQ=255)
                                                   aGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCa                                                                                    <  7:104442/148‑1 (MQ=255)
                                                       caTTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCgag                                                                                              >  1:36462/1‑134 (MQ=255)
                                                       caTTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCgag                                                                                              <  2:36462/134‑1 (MQ=255)
                                                        aTTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTGCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACtt                                                                              >  1:310695/1‑149 (MQ=255)
                                                           aTGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTgc                                                                            <  2:305865/148‑1 (MQ=255)
                                                             ctgcagtacaccggcggcaccaccggcctggccaagggcgccatgctcacccatggcaacctggtggccaacatgctgcaagtgCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTgca                                                                           >  1:179557‑M1/85‑149 (MQ=255)
                                                              tgcagtacaccggcggcaccaccggcctggccaagggcgccatgctcacccatggcaacctggtggccaacatgctgcaagtgCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGc                                                                                      >  8:236310‑M1/84‑137 (MQ=255)
                                                              tgcagtacaccggcggcaccaccggcctggccaagggcgccatgctcacccatggcaacctggtggccaacatgctgcaagtgCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGc                                                                                      <  7:236310‑M1/54‑1 (MQ=255)
                                                               ttGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTcagc                                                                                                                            <  3:6111/96‑1 (MQ=255)
                                                               ttGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTcagc                                                                                                                            >  4:6111/1‑96 (MQ=255)
                                                                   cGGTGACCATCATGCACCTGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTg                                                                   <  4:189407/149‑1 (MQ=255)
                                                                          catcatGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATc                                                                                                              <  2:287031/99‑1 (MQ=255)
                                                                          catcatGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATc                                                                                                              >  1:287031/1‑99 (MQ=255)
                                                                          catcatGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTCCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGccac                                                              >  5:272323/1‑147 (MQ=255)
                                                                               tgcacatgcaGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTg                                                       <  4:189159/149‑1 (MQ=255)
                                                                                    atgcaGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAg                                                                                        <  2:45332/111‑1 (MQ=255)
                                                                                    atgcaGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAg                                                                                        >  1:45332/1‑111 (MQ=255)
                                                                                     tgcaGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATgg                                                 <  2:162216/149‑1 (MQ=255)
                                                                                      gcaGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATggg                                                >  1:85837/1‑149 (MQ=255)
                                                                                        aGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTc                                                                                                                      <  6:34038/77‑1 (MQ=255)
                                                                                        aGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTc                                                                                                                      >  5:34038/1‑77 (MQ=255)
                                                                                         gTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGt                                               >  7:23525/1‑147 (MQ=255)
                                                                                         gTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGa                                             >  7:239373/1‑149 (MQ=255)
                                                                                              cgGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATg                                        <  1:130693/149‑1 (MQ=255)
                                                                                                   aaGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGcc                                   <  1:125395/149‑1 (MQ=255)
                                                                                                   aaGGCATACATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTACTGCCCGTCCTTCAGCAGCTACTGCCCATCGGGGCAGTCCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTCGCCACCAGGTTGCCATGGGTGACCATGGCGcc                                   >  6:102439/1‑149 (MQ=255)
                                                                                                        aTAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGc                                                                 <  4:99294/114‑1 (MQ=255)
                                                                                                        aTAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGc                                                                 >  3:99294/1‑114 (MQ=255)
                                                                                                        aTAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTgg                              >  6:240163/1‑149 (MQ=255)
                                                                                                        aTAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTgg                              >  2:107818/1‑149 (MQ=255)
                                                                                                            aTGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAg                          >  7:26548/1‑149 (MQ=255)
                                                                                                             tgt‑‑gGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAgg                                                          >  7:81073/1‑116 (MQ=255)
                                                                                                             tgt‑‑gGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAgg                                                          <  8:81073/116‑1 (MQ=255)
                                                                                                                  ggTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCg                      >  7:62776/1‑149 (MQ=255)
                                                                                                                   gTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGGGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCgg                     <  5:240163/149‑1 (MQ=255)
                                                                                                                    tACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggt                    <  7:85785/149‑1 (MQ=255)
                                                                                                                    tACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggt                    <  8:23525/149‑1 (MQ=255)
                                                                                                                    tACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggt                    <  8:239373/149‑1 (MQ=255)
                                                                                                                    tACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggt                    <  8:26548/149‑1 (MQ=255)
                                                                                                                     aCAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggtg                   >  3:171178/1‑149 (MQ=255)
                                                                                                                        gcggcagcggcGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGgtggtg                >  3:24581/1‑149 (MQ=255)
                                                                                                                              gcggcgCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGccgccg          <  2:85837/149‑1 (MQ=255)
                                                                                                                                ggcgCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCTTGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt        <  4:24581/149‑1 (MQ=255)
                                                                                                                                       tcatcaCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt        >  3:230607/1‑142 (MQ=255)
                                                                                                                                       tcatcaCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTg  >  7:133821/1‑148 (MQ=255)
                                                                                                                                       tcagcaCGTCCAGGCCGTCCTTCAGCCGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt        <  4:230607/142‑1 (MQ=255)
                                                                                                                                            aCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt        <  7:112415/137‑1 (MQ=255)
                                                                                                                                            aCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt        >  8:112415/1‑137 (MQ=255)
                                                                                                                                                 |                                                                                                                                         
CACTTGCCCAGCTCCTTGATGAAGCCGGGAATATCCCGCGGGTTGGTAATCAGCACATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGT‑‑GGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTG  >  NC_002947/5174063‑5174343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.