New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5174206 =	54 (1.090)	3 (0.060)	3/244	NT	5.9%	coding (774/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase
	?	NC_002947	5174263 =	45 (0.960)					coding (717/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase

ATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCA  >  NC_002947/5174119‑5174408                                                                                                                                                 |                                                                                                                                                  aTTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTGCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACtt                                                                                                                                               >  1:310695/1‑149 (MQ=255)    ctgcagtacaccggcggcaccaccggcctggccaagggcgccatgctcacccatggcaacctggtggccaacatgctgcaagtgCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTgca                                                                                                                                            >  1:179557‑M1/85‑149 (MQ=255)    aTGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTgc                                                                                                                                             <  2:305865/148‑1 (MQ=255)            cGGTGACCATCATGCACCTGCAGTTCGCGGTGAAGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTg                                                                                                                                    <  4:189407/149‑1 (MQ=255)                   catcatGCACATGCAGTTCGCGGTGAAGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTCCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGccac                                                                                                                               >  5:272323/1‑147 (MQ=255)                        tgcacatgcaGTTCGCGGTGAAGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTg                                                                                                                        <  4:189159/149‑1 (MQ=255)                              tgcaGTTCGCGGTGAAGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATgg                                                                                                                  <  2:162216/149‑1 (MQ=255)                               gcaGTTCGCGGTGAAGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATggg                                                                                                                 >  1:85837/1‑149 (MQ=255)                                  gTTCGCGGTGAAGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGt                                                                                                                >  7:23525/1‑147 (MQ=255)                                  gTTCGCGGTGAAGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGa                                                                                                              >  7:239373/1‑149 (MQ=255)                                       cgGTGAAGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATg                                                                                                         <  1:130693/149‑1 (MQ=255)                                            aaGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGcc                                                                                                    <  1:125395/149‑1 (MQ=255)                                            aaGGCATACATGTGGTACAGCGGCAGCGGCGCAATCATCACTTACTGCCCGTCCTTCAGCAGCTACTGCCCATCGGGGCAGTCCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTCGCCACCAGGTTGCCATGGGTGACCATGGCGcc                                                                                                    >  6:102439/1‑149 (MQ=255)                                                 aTAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGc                                                                                                                                  <  4:99294/114‑1 (MQ=255)                                                 aTAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGc                                                                                                                                  >  3:99294/1‑114 (MQ=255)                                                 aTAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTgg                                                                                               >  2:107818/1‑149 (MQ=255)                                                 aTAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTgg                                                                                               >  6:240163/1‑149 (MQ=255)                                                     aTGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAg                                                                                           >  7:26548/1‑149 (MQ=255)                                                      tgtgGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAgg                                                                                                                           <  8:81073/116‑1 (MQ=255)                                                      tgtgGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAgg                                                                                                                           >  7:81073/1‑116 (MQ=255)                                                         ggTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCg                                                                                       >  7:62776/1‑149 (MQ=255)                                                          gTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGGGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCgg                                                                                      <  5:240163/149‑1 (MQ=255)                                                           tACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggt                                                                                     <  8:239373/149‑1 (MQ=255)                                                           tACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggt                                                                                     <  7:85785/149‑1 (MQ=255)                                                           tACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggt                                                                                     <  8:23525/149‑1 (MQ=255)                                                           tACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggt                                                                                     <  8:26548/149‑1 (MQ=255)                                                            aCAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCggtg                                                                                    >  3:171178/1‑149 (MQ=255)                                                               gcggcagcggcGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGgtggtg                                                                                 >  3:24581/1‑149 (MQ=255)                                                                     gcggcgCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGccgccg                                                                           <  2:85837/149‑1 (MQ=255)                                                                       ggcgCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCTTGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt                                                                         <  4:24581/149‑1 (MQ=255)                                                                              tcatcaCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt                                                                         >  3:230607/1‑142 (MQ=255)                                                                              tcatcaCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTg                                                                   >  7:133821/1‑148 (MQ=255)                                                                              tcagcaCGTCCAGGCCGTCCTTCAGCCGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt                                                                         <  4:230607/142‑1 (MQ=255)                                                                                tgcaagtgctggcctgcttctcgcagcacggccccgatgggcagaagctgctgaaggacggccagCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTgcag                                                                >  1:179557‑M2/66‑149 (MQ=255)                                                                                   aCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt                                                                         <  7:112415/137‑1 (MQ=255)                                                                                   aCTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGgt                                                                         >  8:112415/1‑137 (MQ=255)                                                                                           gcctgcttctcgcagcacggccccgatgggcagaagctgctgaaggacggccagCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTgca                                                                 >  8:236310‑M2/55‑137 (MQ=255)                                                                                           gcctgcttctcgcagcacggccccgatgggcagaagctgctgaaggacggccagCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTgca                                                                 <  7:236310‑M2/83‑1 (MQ=255)                                                                                           GCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGt                                                     <  5:206551‑M1/149‑1 (MQ=255)                                                                                           GCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGt                                                     <  8:51618‑M1/149‑1 (MQ=255)                                                                                              gTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCAt                                                  <  1:107818/149‑1 (MQ=255)                                                                                                   tCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAgg                                             >  7:151411/1‑149 (MQ=255)                                                                                                    cagcagCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAg                                              <  8:62776/147‑1 (MQ=255)                                                                                                     agcagcTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGtt                                           >  2:274839/1‑149 (MQ=255)                                                                                                          cTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGc                                       <  6:152968/148‑1 (MQ=255)                                                                                                          cTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGc                                       >  5:152968/1‑148 (MQ=255)                                                                                                           ttCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGa                                     >  1:80554/1‑149 (MQ=255)                                                                                                                cccATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGacac                                  <  2:80554/147‑1 (MQ=255)                                                                                                                    tCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGttt                            <  8:151411/149‑1 (MQ=255)                                                                                                                    tCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCAGttt                            <  6:206551/149‑1 (MQ=255)                                                                                                                             tgctgcGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAg                   <  4:171178/149‑1 (MQ=255)                                                                                                                              gctgcGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGc                  <  8:133821/149‑1 (MQ=255)                                                                                                                                        gCAGGCCAGCACTTGCAGCATGTTGGTCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCt        >  4:245973/1‑149 (MQ=255)                                                                                                                                            gccagCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTcgcg    >  4:139916‑M2/6‑149 (MQ=255)                                                                                                                                              ctgCACTTGCTGATTGTGGGCCACCTGGTGGCCTTGGGTGAGCAGGGGGCCCTTGGCCTGGCGGGTGGTGCCGCGGGTTTATTGCTGCACCGCTTTGTATTCGAGGTTCAGCTACACGGGTTTGGGCTACAGCCCGCGGCCCTCGCgca  <  6:272323/147‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  ATTATGGTTGCCGGTGACCATCATGCACATGCAGTTCGCGGTGAAGGCATAGATGTGGTACAGCGGCAGCGGCGCAATCATCACTTCCTGGCCGTCCTTCAGCAGCTTCTGCCCATCGGGGCCGTGCTGCGAGAAGCAGGCCAGCACTTGCAGCATGTTGGCCACCAGGTTGCCATGGGTGAGCATGGCGCCCTTGGCCAGGCCGGTGGTGCCGCCGGTGTACTGCAGCACCGCGATGTCATCGAGGTTCAGCGACACCGGTTTGGGCGACAGCCCGCGGCCCTCGCGCA  >  NC_002947/5174119‑5174408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.