New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 853445	47 (0.950)	3 (0.060)	3/244	NT	6.5%	coding (950/1083 nt)	prfA	peptide chain release factor 1
	?	NC_002947	= 853474	42 (0.890)					coding (979/1083 nt)	prfA	peptide chain release factor 1

GCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTGTCATCGCCAGCCTGTTGCGCAACGCGCAGTTGCCT  >  NC_002947/853327‑853619                                                                                                                                                     |                                                                                                                                                   gCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGa                                                                                                                                                    >  4:235949/1‑148 (MQ=255) gCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGa                                                                                                                                                    <  3:235949/148‑1 (MQ=255)  ccAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGAcc                                                                                                                                                  >  8:167007‑M2/1‑147 (MQ=255)   cAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGAccc                                                                                                                                                 <  6:26438‑M2/149‑4 (MQ=255)          aaCGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTAt                                                                                                                                            <  6:253183/147‑1 (MQ=255)                  gCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTGAATGGTGGGTTCCGGTGACCGATCCGAGCGCATCCGAACCTCCAATTATCCACAGGGGCGGGTGACCGATCACGGCTTCAACCTGACCATGTATTCGTTGgac                                                                                                                                   >  1:70834/1‑149 (MQ=255)                   cAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGgacg                                                                                                                                  <  5:43899/148‑1 (MQ=255)                           tGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCa                                                                                                                         >  2:49958/1‑149 (MQ=255)                            gCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGtt                                                                                                                                       <  8:106095/134‑1 (MQ=255)                            gCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGtt                                                                                                                                       >  7:106095/1‑134 (MQ=255)                                cgcAGAACGCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGt                                                                                                                    >  8:212498/1‑149 (MQ=255)                                        gCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGa                                                                                                            >  3:78460/1‑149 (MQ=255)                                          ccTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGCGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAc‑g                                                                                                         >  7:154480/1‑149 (MQ=255)                                              gCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGt                                                                                                     >  6:169716/1‑149 (MQ=255)                                                cAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGtt                                                                                                                                       <  7:297657/114‑1 (MQ=255)                                                cAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGtt                                                                                                                                       >  8:297657/1‑114 (MQ=255)                                                cAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGa                                                                                                   <  2:70834/149‑1 (MQ=255)                                                cAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCCGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGa                                                                                                   <  5:182811/149‑1 (MQ=255)                                                         cAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCg                                                                                                                                         >  1:45011/1‑103 (MQ=255)                                                         cAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCg                                                                                                                                         <  2:45011/103‑1 (MQ=255)                                                              tg‑ctgGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGctgctg                                                                                     <  8:281852/149‑1 (MQ=255)                                                                      gggTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATTAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGaa                                                                               >  8:194847/1‑148 (MQ=255)                                                                         ttCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATAcc                                                                           <  7:212498/149‑1 (MQ=255)                                                                         ttCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATAc                                                                            >  2:31106/1‑148 (MQ=255)                                                                            cGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAg                                                                         <  4:78460/148‑1 (MQ=255)                                                                             ggTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGc                                                                       <  6:174395/149‑1 (MQ=255)                                                                              gTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGACTGCGGTGATCGAACCGCTGCTGGCCGAATACCAGGc                                                                       <  1:47242/149‑1 (MQ=255)                                                                                        cGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTg                                                             <  8:154480/148‑1 (MQ=255)                                                                                         gAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGgc                                                           >  4:303322/1‑149 (MQ=255)                                                                                                  cGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTggg                                                  <  1:49958/149‑1 (MQ=255)                                                                                                     aCCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGa                                               >  1:273344/1‑149 (MQ=255)                                                                                                        tACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACt                                             >  6:4381/1‑148 (MQ=255)                                                                                                         aCAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGa                                                                    >  6:260267/1‑124 (MQ=255)                                                                                                         aCAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGa                                                                    <  5:260267/124‑1 (MQ=255)                                                                                                          cAATTATCCACAGGGGCGGGTGACCGATCACCGCATTAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACtg                                            <  7:194847/147‑1 (MQ=255)                                                                                                          cAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACtga                                           <  3:303322/148‑1 (MQ=255)                                                                                                          cAATNATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACtgat                                          >  5:87372/1‑149 (MQ=255)                                                                                                             ttATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGAc                                       >  8:270699/1‑149 (MQ=255)                                                                                                                tCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGAccctgtggataattgtaggtgcggatgcgctcggagcggtcaccggaacccaccagcagcttgcgctcactggcaagggcgttctgcgcggcactggtctgcatgtcgtt                                      <  4:37029‑M2/148‑111 (MQ=255)                                                                                                                tCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTg                                     <  2:273344/148‑1 (MQ=255)                                                                                                                  cacaGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGAt                                                                   <  8:99270/116‑1 (MQ=255)                                                                                                                  cacaGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGAt                                                                   >  7:99270/1‑116 (MQ=255)                                                                                                                   acaGGGGCGGGTGACCGATCACCGCATCAACCTGAccctgtggataattgtaggtgcggatgcgctcggagcggtcaccggaacccaccagcagcttgcgctcacttgcaag                                                                       >  5:309926‑M2/1‑35 (MQ=255)                                                                                                                   acaGGGGCGGGTGACCGATCACCGCATCAACCTGAccctgtggataattgtaggtgcggatgcgctcggagcggtcaccggaacccaccagcagcttgcgctcactggcaag                                                                       <  6:309926‑M2/112‑78 (MQ=255)                                                                                                                    caGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTGTCATc                                >  8:175372/1‑149 (MQ=255)                                                                                                                              tGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTGTCATCGCCAGCCTGt                      >  1:56183/1‑149 (MQ=255)                                                                                                                                        ccGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTGTCATCGCCAGCCTGTTGCGCAAcgc            >  5:68643/1‑149 (MQ=255)                                                                                                                                        ccGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTGTCATCGCCAGCCTGTTGCGCAAcgc            >  6:135891/1‑149 (MQ=255)                                                                                                                                         cGCATCAACCTGACCCTGTATTCTTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTg                                                    <  5:324051/108‑1 (MQ=255)                                                                                                                                         cGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTg                                                    >  6:324051/1‑108 (MQ=255)                                                                                                                                                aCCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTGTCATCGCCAGCCTGTTGCGCAACGCGCAGTTGc    >  4:135887/1‑149 (MQ=255)                                                                                                                                                aCCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTGTCATCGCCAGCCTGTTGCGCAACGCGCAGTTGc    >  4:131092/1‑149 (MQ=255)                                                                                                                                                 ccTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTGTCATCGCCAGCCTGTTGCGCAACGCGCAGTTGcc   <  6:87372/149‑1 (MQ=255)                                                                                                                                                 ccTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTGTCATCGCCAGCCTGTTGCGCAACGCGCAGTTGcc   >  3:65150/1‑149 (MQ=255)                                                                                                                                                 ccTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTGTCATCGCCAGCCTGTTGCGCAACGCGCAGTTGcc   <  1:31106/149‑1 (MQ=255)                                                                                                                                                  cTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTGTCATCGCCAGCCTGTTGCGCAACGCGCAGTTGCCt  <  5:169716/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GCCAAGCTGAACGACATGCAGACCAGTGCCGCGCAGAACGCCCTTGCCAGTGAGCGCAAGCTG‑CTGGTGGGTTCCGGTGACCGCTCCGAGCGCATCCGCACCTACAATTATCCACAGGGGCGGGTGACCGATCACCGCATCAACCTGACCCTGTATTCGTTGGACGACATCCTCAGCGGTGGCGTAGAC‑GCGGTGATCGAACCGCTGCTGGCCGAATACCAGGCCGATCAACTGGCCGCCTTGGGGGACTGATGACTGTCATCGCCAGCCTGTTGCGCAACGCGCAGTTGCCT  >  NC_002947/853327‑853619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.