New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	990894 =	50 (1.010)	4 (0.090)	4/244	NT	8.5%	coding (775/1143 nt)	PP_0856	lipoprotein
	?	NC_002947	990935 =	38 (0.810)					coding (816/1143 nt)	PP_0856	lipoprotein

GGCCGTTCCGAGCTGGACCGTGTGGTTGATATCGACGGCGGCTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGACAGCATGGCTCGCCGCCAGTTGACCGCCCCTGAAGTGTTCAGCA  >  NC_002947/990789‑991083                                                                                                                                                    |                                                                                                                                                     tcgttgctccacagggcactggaagagcgctcatccacactttccacggtacccgaggcttcgctgacgtagacgttaccgaagccctgggcgacacccacatagCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCt                                                                                                                                                     >  8:172895‑M1/106‑148 (MQ=255)  gCCGTTCCGAGCTGGACCGTGTGGTTGATATCGACGGCGGCTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTAt                                                                                                                                                   >  4:126401/1‑149 (MQ=255)         cGAGCTGGACCGTGTGGTTGATATCGACGGCGGCTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGgtg                                                                                                                                            >  4:30459/1‑149 (MQ=255)         cGAGCTGGACCGTGTGGTTGATATCGACGGCGGCTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGgtg                                                                                                                                            >  6:3458/1‑149 (MQ=255)             cTGGACCGTGTGGTTGATATCGACGGCGGCTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGCTCGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCg                                                                                                                                         <  1:60398/149‑1 (MQ=255)                gACCGTGTGGTTGATATCGACGGCGGCTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGcc                                                                                                                                       <  2:201014/147‑1 (MQ=255)                 aCCGTGTGGTTGATATCGACGGCGGCTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGTCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAg                                                                                                                                    <  1:210815/149‑1 (MQ=255)                      gaagagcgctcatccacactttccacggtacccgaggcttcgctgacgtagacgttaccgaagccctgggcgacacccacatagCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTAt                                                                                                                                                   >  8:94136‑M1/85‑129 (MQ=255)                      gaagagcgctcatccacactttccacggtacccgaggcttcgctgacgtagacgttaccgaagccctgggcgacacccacatagCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTAt                                                                                                                                                   <  7:94136‑M1/45‑1 (MQ=255)                         gTTGATATCGACGGCGGCTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCg                                                                                                                             <  4:97288/148‑1 (MQ=255)                               atCGACGGCGGCTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGt                                                                                                                      >  3:45052/1‑149 (MQ=255)                                  gACGGCGGCTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTa                                                                                                                   >  4:69073/1‑149 (MQ=255)                                   aCGGCGGCTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTAc                                                                                                                  <  5:3458/149‑1 (MQ=255)                                        ggcTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAg                                                                                                             >  4:79602/1‑149 (MQ=255)                                           ttgttgCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCg                                                                                                           >  8:27909/1‑148 (MQ=255)                                             gttgCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGaa                                                                                                         <  3:69073/148‑1 (MQ=255)                                             gttgCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAg                                                                                                        >  4:162175/1‑149 (MQ=255)                                              ttgCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAg                                                                                                             <  1:125846/143‑1 (MQ=255)                                               tgCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGt                                                                                                                      >  2:167077/1‑133 (MQ=255)                                               tgCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGt                                                                                                                      <  1:167077/133‑1 (MQ=255)                                                 cTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCt                                                                                                     <  6:256550/148‑1 (MQ=255)                                                    tCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCggg                                                                                                 >  8:165851/1‑149 (MQ=255)                                                    tCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGCTGACGTAGACGTTACCGAAGccctggg                                                                                                 <  5:238467/149‑6 (MQ=38)                                                           gtACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTg                                                                                          >  8:263428/1‑149 (MQ=255)                                                                  gTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAgtg                                                                                   >  7:120246/1‑149 (MQ=255)                                                                      gTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGa                                                                               <  4:45052/149‑1 (MQ=255)                                                                       tCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGAt                                                                              <  3:144646/149‑1 (MQ=255)                                                                       tCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGAt                                                                              >  6:9845/1‑149 (MQ=255)                                                                       tCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGAt                                                                              <  7:263428/149‑1 (MQ=255)                                                                                    gggCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCa                                                                 >  7:131723/1‑149 (MQ=255)                                                                                         gtgtAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGcc                                                            <  3:162175/149‑1 (MQ=255)                                                                                            tAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCtg                                                         >  4:213123/1‑149 (MQ=255)                                                                                            tAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCt                                                          <  3:79602/148‑1 (MQ=255)                                                                                                    ctggacctggaAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTc                                                                                                    >  8:49087/1‑98 (MQ=255)                                                                                                    ctggacctggaAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTc                                                                                                    <  7:49087/98‑1 (MQ=255)                                                                                                    ctggacctggaAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTTGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCaa                                                 >  4:191007/1‑149 (MQ=255)                                                                                                       gacctggaAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAAc                                                <  8:120246/147‑1 (MQ=255)                                                                                                       atagctggaagcatcgcgctgccacagctcgcggccgctttccagCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTc                                                                   >  8:94136‑M2/46‑129 (MQ=255)                                                                                                       atagctggaagcatcgcgctgccacagctcgcggccgctttccagCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTc                                                                   <  7:94136‑M2/84‑1 (MQ=255)                                                                                                         agctggaagcatcgcgctgccacagctcgcggccgctttccagCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGa                                              >  8:172895‑M2/44‑148 (MQ=255)                                                                                                            GGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTgg                                                                                <  2:174095‑M1/110‑1 (MQ=255)                                                                                                            GGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTgg                                                                                >  1:174095‑M1/1‑110 (MQ=255)                                                                                                             GAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGACAGCa                                         >  8:131723‑M1/1‑148 (MQ=255)                                                                                                               AAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGACAGCATgg                                      >  5:9845‑M1/1‑149 (MQ=255)                                                                                                                       cgcgAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAgtgt                                                                                  <  6:18461/98‑1 (MQ=255)                                                                                                                       cgcgAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAgtgt                                                                                  >  5:18461/1‑98 (MQ=255)                                                                                                                            gCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGACAGCATGGCTCGCCGCCAGt                          >  8:92750/1‑149 (MQ=255)                                                                                                                               gtgGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAg                                                    >  4:129647/1‑120 (MQ=255)                                                                                                                                     gcgcGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGACAGCATGGCTCGCCGCCAGTTGACCGccc                 <  7:92750/149‑1 (MQ=255)                                                                                                                                       ggccgctttccagCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGACAGCATGGCTCGCCGCCAGTTGACCGCCCCt               <  7:172895‑M2/136‑1 (MQ=255)                                                                                                                                         gATGCTTACAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGACAGCATGGCTCGCCGCCAGATGACCGCCCCTg              >  7:162398/1‑148 (MQ=255)                                                                                                                                          aTGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGACAGCATGGCTCGCCGCCAGTTGACCGCCCCTGaa            <  3:30459/149‑1 (MQ=255)                                                                                                                                           tGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGACAGCATGGCTCGCCGCCAGTTGACCGCCCCTGAAg           <  7:27909/149‑1 (MQ=255)                                                                                                                                                 cagCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGACAGCATGGCTCGCCGCCAGTTGACCGCCCCTGAAGTGTTCa     <  3:213123‑M2/146‑1 (MQ=255)                                                                                                                                                    cTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGACAGCATGGCTCGCCGCCAGTTGACCGCCCCTGAAGTGTTcagca  <  3:126401/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GGCCGTTCCGAGCTGGACCGTGTGGTTGATATCGACGGCGGCTTGTTGCTGTCTGGTGGTACCCTGTACGTCAGCACCTACCAGGGCCGTGTAGCGGGCCTGGACCTGGAAAGCGGC‑CGCGAGCTGTGGCAGCGCGATGCTTCCAGCTATGTGGGTGTCGCCCAGGGCTTCGGTAACGTCTACGTCAGCGAAGCCTCGGGTACCGTGGAAAGTGTGGATGAGCGCTCTTCCAGTGCCCTGTGGAGCAACGACAGCATGGCTCGCCGCCAGTTGACCGCCCCTGAAGTGTTCAGCA  >  NC_002947/990789‑991083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.