New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1531447	51 (1.030)	3 (0.060)	3/248	NT	6.6%	coding (429/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	= 1531499	36 (0.750)					coding (377/630 nt)	PP_1344	hypothetical protein

GAAAGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAGTGCTCCAGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCGG  >  NC_002947/1531352‑1531644                                                                                                                                                    |                                                                                                                                                  gAAAGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATg                                                                                                                                                  >  5:233306‑M2/1‑148 (MQ=255)  aaaGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATgg                                                                                                                                                 <  5:33007‑M2/149‑3 (MQ=255)     gCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCg                                                                                                                                              >  8:292704/1‑149 (MQ=255)      cTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGt                                                                                                                                             <  5:263546/149‑1 (MQ=255)       tCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTc                                                                                                                                            >  6:47983/1‑149 (MQ=255)         ggCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCgg                                                                                                                                          <  7:83785/149‑1 (MQ=255)         ggCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCgg                                                                                                                                          <  7:79361/149‑1 (MQ=255)         ggCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCg                                                                                                                                           <  8:197899/148‑1 (MQ=255)         ggCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCg                                                                                                                                           <  8:123939/148‑1 (MQ=255)               aTGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAacca                                                                                                                                    >  5:93025/1‑149 (MQ=255)               aTGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAacca                                                                                                                                    <  5:165171/149‑1 (MQ=255)                  cccGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAaccac                                                                                                                                   >  6:188168/1‑147 (MQ=255)                  cccGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAAccacca                                                                                                                                 <  5:188168/149‑1 (MQ=255)                   ccGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAg                                                                                                                                <  5:158468/149‑1 (MQ=255)                        aCGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGcaaca                                                                                                                           <  6:93025/149‑1 (MQ=255)                              ggCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGt                                                                                                                       <  3:54436/147‑1 (MQ=255)                                        aGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCa                                                                                                           <  7:292704/149‑1 (MQ=255)                                         gcggcgGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAg                                                                                                          <  4:296534/149‑1 (MQ=255)                                            gcggcTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGAc                                                                                                       <  6:33007/149‑1 (MQ=255)                                                       ttGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATgg                                                                                              >  6:70505/1‑147 (MQ=255)                                                             aGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCCCCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTc                                                                                      >  6:22279/1‑149 (MQ=255)                                                             aGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTc                                                                                      >  3:140306/1‑149 (MQ=255)                                                                 tGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCgg                                                                                  <  3:174085/149‑1 (MQ=255)                                                                    gcCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCa                                                                                            >  7:183609/1‑136 (MQ=255)                                                                    gcCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCa                                                                                            <  8:183609/136‑1 (MQ=255)                                                                    gcCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCggg                                                                                 >  2:37755/1‑147 (MQ=255)                                                                         aGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCgg                                                                          <  5:47983/149‑1 (MQ=255)                                                                           gTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGtt                                                                        >  8:90089/1‑149 (MQ=255)                                                                               ccGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCGGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCa                                                                     <  5:24109/148‑1 (MQ=255)                                                                                 gAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACt                                                                  >  8:26948/1‑149 (MQ=255)                                                                                  aaTGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTcgc                                                                                    <  3:167021/130‑1 (MQ=255)                                                                                  aaTGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTcgc                                                                                    >  4:167021/1‑130 (MQ=255)                                                                                    tGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGc                                                               <  5:70505/149‑1 (MQ=255)                                                                                       ttCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCttt                                                            >  5:155370/1‑149 (MQ=255)                                                                                         ccATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATggccatggaagcattcggcaacctcaggcgcatcctgtacaaggtaca                                                                                                   <  1:87384‑M2/108‑49 (MQ=255)                                                                                         ccATGGCCTCCAGGGCCGCCACCACGCGCTTCGGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGGCGGTAACCACCAGCAACACAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCAGTTGCAACCGGCtgc                                                            <  8:292017/147‑3 (MQ=255)                                                                                          cATGGGCTGGAGGGCCGCCAAGAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGGCCAATGGCCGTCGGTAACCACCAGCAACATAGTACGATCGCGCCAGGACGcc                                                                                                    <  2:127732/106‑1 (MQ=255)                                                                                          cATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATggccatggaagcattcggcaacctcaggcgcatcctgtacaaggtacagccgccgctggtaccggccaagcgtggcgggcatgcggccga                                                         >  6:320186‑M2/1‑59 (MQ=255)                                                                                          cATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATggccatggaagcattcggcaacctcaggcgcatcctgtacaaggtacagccgccgctggtaccggccaagcgtggcgggcatgcggcc                                                           <  5:320186‑M2/147‑89 (MQ=255)                                                                                          aaTGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGcc                                                                                                    >  1:127732/2‑106 (MQ=255)                                                                                                        ccgccAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAg                                           <  7:90089/149‑1 (MQ=255)                                                                                                             aacaaGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAGTGCTc                                      >  7:183362/1‑149 (MQ=255)                                                                                                               caaGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAGTGCTCCa                                    <  4:140306/149‑1 (MQ=255)                                                                                                                             ggTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAGTGCTCCAGGCGCTCGGCCTgg                      >  1:191043/1‑149 (MQ=255)                                                                                                                                 gcgcAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAGTGCTCCAGGCGCTCGGCCTGGtt                    >  2:40353/1‑147 (MQ=255)                                                                                                                                 gcgcAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAGTGCTCCAGGCGCTCGGCCTGGTTca                  <  5:67887/149‑1 (MQ=255)                                                                                                                                     aGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAGTGCTCCAGGCGCTCGGCCTGGTTcagcag              >  4:33102/1‑149 (MQ=255)                                                                                                                                          ggTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAGTGCTCCAGGCGCTCGGCCTGGTTCAGCAGCAGgc         >  3:143946/1‑149 (MQ=255)                                                                                                                                                ccAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAGTGCTCCAGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCg   >  1:257516/1‑149 (MQ=255)                                                                                                                                                ccAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAGTGCTCCAGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCg   <  7:26948/149‑1 (MQ=255)                                                                                                                                                 cAATGTCCGTCGGTAACCAGCAGCAACAAAGTACCATCGCGCCAGGACGCCACCTGGCAGGGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAGTGCTCCCGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCgg  <  5:22279/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GAAAGCTCGGCCGCATGCCCGCCACGCTTGGCCGGTACCAGCGGCGGCTGTACCTTGTACAGGATGCGCCTGAGGTTGCCGAATGCTTCCATGGCCTGCAGGGCCGCCAACAAGCGCTTCTGCTGGTAGCGCAGGCGGGTTGCCCAATGGCCGTCGGTAACCACCAGCAACAAAGTACCATCGCGCCAGGACGCCACATGGCAGTGCTCGCGGGCAGCCGGTTGCAACTGGCTTTCCAGCAGGCGCTGCAAGTGCTCCAGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGCGG  >  NC_002947/1531352‑1531644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.