New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1675701 =	48 (0.970)	3 (0.060)	3/242	NT	6.6%	coding (868/1305 nt)	hom	homoserine dehydrogenase
	?	NC_002947	1675742 =	39 (0.840)					coding (909/1305 nt)	hom	homoserine dehydrogenase

GTATCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGATCCTGCCGATCGAAGCCTGCGAAAGCGCCTAC  >  NC_002947/1675600‑1675889                                                                                                                                               |                                                                                                                                                    gcgagtctggctggaatgccaggtgcggcacacggttctccgggtcggaggtcatggcacggaccacgtcgaccaggtcgccgaccactgacgaagcggtaGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCt                                                                                                                                                     <  8:278773‑M1/42‑1 (MQ=255) gcgagtctggctggaatgccaggtgcggcacacggttctccgggtcggaggtcatggcacggaccacgtcgaccaggtcgccgaccactgacgaagcggtaGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCt                                                                                                                                                     >  7:278773‑M1/102‑143 (MQ=255)    tCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCg                                                                                                                                            >  1:282536/1‑149 (MQ=255)    tCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGGCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTc                                                                                                                                             <  8:57347/148‑1 (MQ=255)        gTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAg                                                                                                                                        >  7:105008/1‑149 (MQ=255)           gcgcGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTg                                                                                                                                      <  2:58818/148‑1 (MQ=255)                    cccGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGAcc                                                                                                                            >  5:265678/1‑149 (MQ=255)                    cccGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGAcc                                                                                                                            <  5:225266/149‑1 (MQ=255)                      cGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTg                                                                                                                          >  6:146677/1‑149 (MQ=255)                          gCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCGGGtat                                                                                                                      <  6:7073/149‑3 (MQ=255)                              aTCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGAc                                                                                                                    <  6:265678/147‑1 (MQ=255)                                cccGGCCGACCCTCTGATCGCCACAGTCCACGGCGTGATGAACGCTGCCATCCTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTgg                                                                                                                <  4:8674/149‑1 (MQ=255)                                   ggCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTcc                                                                                                             >  8:75521/1‑149 (MQ=255)                                          cGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTc                                                                                                                                             <  6:251931/110‑1 (MQ=255)                                          cGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTc                                                                                                                                             >  5:251931/1‑110 (MQ=255)                                          cGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCAt                                                                                                      <  3:178322/149‑1 (MQ=255)                                            tCTGATTGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGa                                                                                                    >  4:128044/1‑149 (MQ=255)                                            tCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGa                                                                                                    >  7:263593/1‑149 (MQ=255)                                                aTCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGAGCCATGACCTc                                                                                                >  1:263066/1‑149 (MQ=255)                                                      aaCGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGAccc                                                                                          <  5:146677/149‑1 (MQ=255)                                                       aCGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCg                                                                                         >  5:157498/1‑149 (MQ=255)                                                       aCGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGAGCCATGACCTCCGACCCg                                                                                         <  2:263066/149‑1 (MQ=255)                                                            aaCGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGaa                                                                                    >  6:79664/1‑149 (MQ=255)                                                              cGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAAcc                                                                                  <  8:263593/149‑1 (MQ=255)                                                                 cGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCgtg                                                                               <  3:11770/149‑1 (MQ=255)                                                                    gatgaACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTcc                                                                                               <  5:175670/130‑1 (MQ=255)                                                                    gatgaACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTcc                                                                                               >  6:175670/1‑130 (MQ=255)                                                                     atgaACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGc                                                                            <  2:282536/148‑1 (MQ=255)                                                                         aCGCTGGCATGGTCAACGGTGATGCTCCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCTGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCAc                                                                       <  4:254958/149‑1 (MQ=255)                                                                               tCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCa                                                                 >  5:116803/1‑149 (MQ=255)                                                                                    gTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTcca                                                            <  3:128044/149‑1 (MQ=255)                                                                                       aaCGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTccagc                                                          <  6:157498/148‑1 (MQ=255)                                                                                                  tgcCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTACAGCCAGACTCGCTGt                                              >  6:56899/1‑149 (MQ=255)                                                                                                     aggctccatacccgcgccagcaccgtagtacagggtggagccTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGc                                                 >  7:278773‑M2/43‑143 (MQ=255)                                                                                                     aggctccatacccgcgccagcaccgtagtacagggtggagccTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGc                                                 <  8:278773‑M2/101‑1 (MQ=255)                                                                                                      GGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGATTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGc                                          <  1:69498‑M1/149‑1 (MQ=255)                                                                                                       gctccatacccgcgccagcaccgtagtacagggtggagccTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGcc                                         >  6:219183‑M2/41‑149 (MQ=255)                                                                                                         tacaaccTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCAAGACTCGCTGTCGGCCCa                                       >  6:120307/6‑149 (MQ=255)                                                                                                         TCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGa                                                                                             >  5:111187‑M1/1‑95 (MQ=255)                                                                                                         TCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGa                                                                                             <  6:111187‑M1/95‑1 (MQ=255)                                                                                                              ccTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGa                                  <  8:105008/149‑1 (MQ=255)                                                                                                                 gTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGATcc                               >  6:37096/1‑149 (MQ=255)                                                                                                                 gTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCACCCAGACTCGCTGTCGGCCCACCCGAAcc                               >  6:32445/1‑149 (MQ=255)                                                                                                                  tactacGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGATc                                <  7:75521/147‑1 (MQ=255)                                                                                                                     tacGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGATCCTGcc                           >  2:313299/1‑149 (MQ=255)                                                                                                                             tGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCgtgt                                                                              <  3:204717/90‑1 (MQ=255)                                                                                                                             tGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCgtgt                                                                              >  4:204717/1‑90 (MQ=255)                                                                                                                                   gggTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGATCCTGCCGATCGAAGCCTGc              >  8:28864/1‑148 (MQ=255)                                                                                                                                         ggagccTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGATCCTGCCGATCGAAGCCTGCGAAAgcg       >  3:7598‑M2/7‑149 (MQ=255)                                                                                                                                         ggagccTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGATCCTGCCGATCGAAGCCTGCGAAAgcg       >  3:3205‑M2/7‑149 (MQ=255)                                                                                                                                          gagccTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGATCCTGCCGATCGAAGCCTGCGAAAgcgc      <  6:116803‑M2/144‑1 (MQ=255)                                                                                                                                           agccTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGATCCTGCCGATCGAAGCCTGCGAAAGCGcc     <  5:219183‑M2/145‑1 (MQ=255)                                                                                                                                             ccTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGATCCTGCCGATCGAAGCCTGCGAAAGCGCCTa   <  2:44380‑M2/147‑1 (MQ=255)                                                                                                                                              cTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCGATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGATCCTGCCGATCGAAGCCTGCGAAAGCGCCTAc  >  1:228862‑M2/2‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                    GTATCGAGTTGCGCGTGCACCCGACGCTGATCCCGGCCGACCGTCTGATCGCCAACGTCAACGGCGTGATGAACGCTGTCATGGTCAACGGTGATGCTGCCGGCTCCACCCTGTACTACGGTGCTGGCGCGGGTATGGAGCCTACCGCTTCGTCAGTGGTCGGCGACCTGGTCGACGTGGTCCGTGCCATGACCTCCGACCCGGAGAACCGTGTGCCGCACCTGGCATTCCAGCCAGACTCGCTGTCGGCCCACCCGATCCTGCCGATCGAAGCCTGCGAAAGCGCCTAC  >  NC_002947/1675600‑1675889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.