New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2354551	55 (1.110)	6 (0.130)	4/240	NT	11.0%	intergenic (‑20/+38)	PP_2068/PP_2069	multidrug MFS transporter membrane fusion protein/multidrug MFS transporter outer membrane protein
	?	NC_002947	= 4856112	46 (0.990)					intergenic (+84/+112)	PP_4270/PP_5670	hypothetical protein/hypothetical protein

ACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTACGTTCAAACGCCACGCTGAC  >  NC_002947/4855964‑4856256                                                                                                                                                       |                                                                                                                                                 aCAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTg                                                                                                                                                  >  7:183225/1‑149 (MQ=255)             tgGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACg                                                                                                                                      >  8:285617/1‑149 (MQ=255)               gcccggcccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACgg                                                                                                                                     <  7:60666/148‑1 (MQ=255)                cccggcccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGc                                                                                                                                   >  1:208320/1‑149 (MQ=255)                  cggcccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACggggat                                                                                                                                 <  6:156351/149‑4 (MQ=255)                   ggcccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCGCATTGAGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGaa                                                                                                                                <  3:37573/149‑1 (MQ=255)                    gcccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAg                                                                                                                               <  8:183225/149‑1 (MQ=255)                      ccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCCACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGcc                                                                                                                             >  5:22546/1‑149 (MQ=255)                      ccgAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGcc                                                                                                                             >  3:245350/1‑149 (MQ=255)                          aaTACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAGCACGGGCTTCGCCCGTg                                                                                                                         >  5:271616/1‑149 (MQ=255)                           aTACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAGCACGGGCTTCGCCCGTgt                                                                                                                        <  6:271616/149‑2 (MQ=255)                               ccAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATc                                                                                                                    >  8:185261/1‑149 (MQ=255)                                cAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATc                                                                                                                    >  2:228975/1‑148 (MQ=255)                                cAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATc                                                                                                                    >  8:163267/1‑148 (MQ=255)                                  gCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCAc                                                                                                                 >  5:244492/1‑149 (MQ=255)                                            ggCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTatat                                                                                                       >  6:301053/1‑149 (MQ=255)                                             gCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATAtt                                                                                                      <  8:50414/149‑1 (MQ=255)                                                 acaGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATAttcttc                                                                                                  <  7:163267/149‑1 (MQ=255)                                                     ccagcGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCgg                                                                                              >  7:44045/1‑149 (MQ=255)                                                     ccagcGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCATGcccgcgaagaatatagcgcggtggatggcacgggcttcgcccgtgttcgcgg                                                                                              <  4:90131‑M2/149‑53 (MQ=255)                                                            aaCTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGAGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGcc                                                                                       <  8:292967/149‑1 (MQ=255)                                                            aaCTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCATGcccgcgaagaatatagcgcggtggatggcacgggcttcgcccgtgttcgcgggcaagcc                                                                                       >  3:90131‑M2/1‑90 (MQ=255)                                                                      ccTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCcaca                                                                             <  6:22546/149‑1 (MQ=255)                                                                             aTTTCGCGACCGCTTGCGCTACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCAtt                                                                        <  7:210639/147‑1 (MQ=255)                                                                             aTTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATtgt                                                                      >  5:66349/1‑149 (MQ=255)                                                                                 cgcgACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCg                                                                   <  3:107018/148‑1 (MQ=255)                                                                                 cgcgACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCg                                                                   <  3:107015/148‑1 (MQ=255)                                                                                    gACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGca                                                                >  1:151729/1‑148 (MQ=255)                                                                                        gCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTTATAttcttc                                                                                                  >  8:253259/1‑110 (MQ=255)                                                                                        gCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTTATAttcttc                                                                                                  <  7:253259/110‑1 (MQ=255)                                                                                        gCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTc                                                           <  6:244492/149‑1 (MQ=255)                                                                                         cTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTca                                                          <  5:301053/149‑1 (MQ=255)                                                                                          ttGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCAACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTc                                                           >  1:245686/1‑148 (MQ=255)                                                                                          ttGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GGAGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTca                                                          >  1:241782/1‑149 (MQ=255)                                                                                             cgcAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAAt                                                      <  4:245350/149‑1 (MQ=255)                                                                                              gcAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAAtc                                                     >  5:45272/1‑149 (MQ=255)                                                                                                 aCTGTCATGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATctct                                                  <  7:285617/149‑1 (MQ=255)                                                                                                  cTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTa                                                 <  8:44045/149‑1 (MQ=255)                                                                                                       ttGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGC‑GG‑GCTTGcctgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgttcgcgggcaa                                                                                          >  1:242216‑M2/1‑47 (MQ=255)                                                                                                       ttGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGC‑GG‑GCTTGcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgttcgcgggcaa                                                                                          <  2:242216‑M2/103‑57 (MQ=255)                                                                                                       ttGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGC‑GG‑GCTTGcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgttcgcgggcaa                                                                                          <  7:213372‑M2/103‑57 (MQ=255)                                                                                                       ttGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGAGC‑GG‑GCTTGcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgttcgcgggcaa                                                                                          >  8:213372‑M2/1‑47 (MQ=255)                                                                                                              aTTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCaa                                     <  6:66349/149‑1 (MQ=255)                                                                                                               tttCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAAc                                    <  7:185261/149‑1 (MQ=255)                                                                                                                 tCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGt                                  >  3:50450/1‑149 (MQ=255)                                                                                                                  cTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGt                                  >  5:314036/1‑148 (MQ=255)                                                                                                                     aaaGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCAc                               <  3:230678/148‑1 (MQ=255)                                                                                                                        gCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCAtt                                                                        >  2:210899/1‑104 (MQ=255)                                                                                                                              gcgATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTAc                     <  2:241782/149‑1 (MQ=255)                                                                                                                              gcgATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTAc                     <  2:245686/149‑1 (MQ=255)                                                                                                                              gcgATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTAc                     >  4:301571/1‑149 (MQ=255)                                                                                                                                gATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTACGt                   <  2:60804/149‑1 (MQ=255)                                                                                                                                      tgtgGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTACGTTCAAAc             >  3:18922/1‑149 (MQ=255)                                                                                                                                          ggAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTACGTTCAAACGCCa         >  1:22986/1‑149 (MQ=255)                                                                                                                                                gg‑gCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTACGTTCAAACGCCACGCt     >  3:303078/1‑148 (MQ=255)                                                                                                                                                   gCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTACGTTCAAACGCCACGCTGAc  <  1:228975/149‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                 ACAGTATGTCTGTGGCCCGGCCCGAAATACCCAGCAAAATGCCGGCACACAGCCAGCGCAACTAACGGCCCTGCTCATTTCGCGACCGCTTGCGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGC‑GG‑GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGCATTGTGCGGCACATTCACAATCTCTATCACAAACTCAACGTCACCGGCCTTTACGTTCAAACGCCACGCTGAC  >  NC_002947/4855964‑4856256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.