New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3082878 =	37 (0.750)	4 (0.090)	3/240	NT	10.7%	coding (1190/1551 nt)	PP_2692	BCCT family transporter
	?	NC_002947	3082933 =	32 (0.690)					coding (1135/1551 nt)	PP_2692	BCCT family transporter

AACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGATGAACCAGCCCCAATAGAACA  >  NC_002947/3082789‑3083076                                                                                                                                                 |                                                                                                                                                gcggatctcgcggggccgcaccatccgcgagatcatcatgacgctgtcgatcatcgcaccgctggtgaccatgttctggttcactgtggTGGGCTGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCTGTACCGCCCACcaca                                                                                                                                             >  6:305802‑M1/90‑149 (MQ=255) aaCTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACcaca                                                                                                                                             <  4:241194/149‑1 (MQ=255)         aacaggaacagCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCACCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAAc                                                                                                                                       >  5:9691/1‑147 (MQ=255)              gaacagCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACa                                                                                                                                >  1:121456/1‑149 (MQ=255)                acagCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATg                                                                                                                              >  4:276071/1‑149 (MQ=255)                 cagCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCccac                                                                                                                                                 <  1:236228/129‑1 (MQ=255)                 cagCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCccac                                                                                                                                                 >  2:236228/1‑129 (MQ=255)                                           gCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGc                                                                                                   <  2:121456/149‑1 (MQ=255)                                                   tGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATc                                                                                                         <  1:93706/135‑1 (MQ=255)                                                   tGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATc                                                                                                         >  2:93706/1‑135 (MQ=255)                                                           tCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTcgc                                                                                   >  3:18505/1‑149 (MQ=255)                                                           tCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTcgc                                                                                   >  6:118400/1‑149 (MQ=255)                                                             ccAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTcgcg                                                                                  >  5:124018/1‑148 (MQ=255)                                                                   gcagGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTg                                                                           <  3:276071/149‑1 (MQ=255)                                                                    cagGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCgatgat                                                                                                          <  4:742/117‑1 (MQ=255)                                                                    cagGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCgatgat                                                                                                          >  3:742/1‑117 (MQ=255)                                                                       gTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATg                                                                              >  3:16775/1‑142 (MQ=255)                                                                       gTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATg                                                                              <  4:16775/142‑1 (MQ=255)                                                                          ttCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGCCAGCGTCATGATGATCTCGCGGATGGTGCGGcccc                                                                    >  2:301615/1‑149 (MQ=255)                                                                            cAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCcgc                                                                  >  6:170596/1‑149 (MQ=255)                                                                            cAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCcgc                                                                  >  1:197477/1‑149 (MQ=255)                                                                               gCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCcgc                                                                  >  5:85994/1‑146 (MQ=255)                                                                                 ttGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCat                                                                                              <  1:75544/116‑1 (MQ=255)                                                                                 ttGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCat                                                                                              >  2:75544/1‑116 (MQ=255)                                                                                     tgtggtgggcggtacagggatcggcctggagctgcaaacgccaggcagcgtcacagcccaCCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCcgc                                                         >  6:305802‑M2/61‑149 (MQ=255)                                                                                        cATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCcgcgc                                                       >  2:57380/1‑148 (MQ=255)                                                                                          tgggcggtaccgggatcggcctggagctgcaaacgccaggcagcgtcaccgcccaCCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGt                                                                                                 >  3:199595‑M2/56‑104 (MQ=255)                                                                                          tgggcggtaccgggatcggcctggagctgcaaacgccaggcagcgtcaccgcccaCCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGt                                                                                                 <  4:199595‑M2/49‑1 (MQ=255)                                                                                          tgggcggtaccgggatcggcctggagctgcaaacgccaggcagcgtcaccgcccaCCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGa                                                     >  3:215138‑M2/56‑148 (MQ=255)                                                                                              CGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATa                                                 <  5:53442‑M1/148‑1 (MQ=255)                                                                                                           tGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATgg                                   >  2:5756/1‑149 (MQ=255)                                                                                                           tGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATgg                                   >  1:306809/1‑149 (MQ=255)                                                                                                                    cAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAg                           <  1:57380/148‑1 (MQ=255)                                                                                                                       cTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGa                       <  6:53442/149‑1 (MQ=255)                                                                                                                        tCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGa                       >  5:59478/1‑148 (MQ=255)                                                                                                                        tCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGAt                      >  4:40043/1‑149 (MQ=255)                                                                                                                          cAGGCCGATCCCGGTACCGCCCACCACAGTTAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGa                       <  6:59478/146‑1 (MQ=255)                                                                                                                          cAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGAt                      <  6:124018/147‑1 (MQ=255)                                                                                                                          cAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGATGa                    <  2:306809/149‑1 (MQ=255)                                                                                                                            ggCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGATGAAc                  <  2:197477/149‑1 (MQ=255)                                                                                                                                gATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGATGAACCAGc              <  5:170596/149‑1 (MQ=255)                                                                                                                                          ccgcccaCCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGATGAACCAGCCCCAATAGaa    <  4:215138‑M2/142‑1 (MQ=255)                                                                                                                                           cgcccaCCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGTCGCATAGCCGATGAACCAGCCCCAATAGAac   <  5:305802‑M2/143‑1 (MQ=255)                                                                                                                                            gcccaCCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGATGAACCAGCCCCAATAGAaca  >  6:290059‑M2/6‑149 (MQ=255)                                                                                                                                            gcccaCCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGATGAACCAGCCCCAATAGAaca  <  4:18505‑M2/144‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                AACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGGCCGATCCCGGTACCGCCCACCACAGTGAACCAGAACATGGTCACCAGCGGTGCGATGATCGACAGCGTCATGATGATCTCGCGGATGGTGCGGCCCCGCGAGATCCGCGCGACATACAGGGCCACCATGGGCGCATAGCCGATGAACCAGCCCCAATAGAACA  >  NC_002947/3082789‑3083076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.