New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3402153 =	33 (0.670)	3 (0.060)	3/242	NT	8.3%	coding (46/369 nt)	PP_3010	hypothetical protein
	?	NC_002947	3402180 =	35 (0.750)					coding (73/369 nt)	PP_3010	hypothetical protein

GACAAAAACCAAAAAAGGGGCAGGCTGCTTGGCAACATTTCCCAGTTTTCGATGGGGCTGCAGGAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAACCTATGAAGTCGAGGGTGATAACGC  >  NC_002947/3402034‑3402316                                                                                                                                                   |                                                                                                                                         gACAAAAACCAAAAAAGGGGCAGGCTGCTTGGCAACATTTCCCAGTTTTCGATGGGGCTGCAGGAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGca                                                                                                                                        >  6:80803/1‑149 (MQ=255)         ccAAAAAAGGGGCAGGCTGCTTGGCAACATTTCCCAGTTTTCGATGGGGCTGCAGGAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAAccc                                                                                                                                <  6:166620/149‑1 (MQ=255)                               ggCAACATTTCCCAGTTTTCGATGGGGCTGCAGGAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGa                                                                                                           <  5:80803/148‑1 (MQ=255)                                         cccAGTTTTCGATGGGGCTGCAGGAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCt                                                                                                 <  3:87893/148‑1 (MQ=255)                                          gcccagataagcgggtgggcttttcacgttcgtgccagcggtataatcgtggctgccacgcacatccgggttttgggcGCAGCCGCGTTGTGCGTCGCAGGCGGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTgg                                                                                               >  4:271819‑M1/79‑149 (MQ=255)                                           cAGTTTTCGATGGGGCTGCAGGAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTgg                                                                                               >  8:214368/1‑148 (MQ=255)                                           cAGTTTTCGATGGGGCTGCAGGAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTgg                                                                                               >  3:263196/1‑148 (MQ=255)                                            ccagataagcgggtgggcttttcacggtagtgccagcggtataatcgtggctgtcacgcacatcagggttttgtgcGCAGCCTCGTTGTTCGTCGCAGGCTgcgc                                                                                                                                         <  3:163264‑M1/29‑1 (MQ=255)                                            ccagataagcgggtgggcttttcacggtagtgccagcggtataatcgtggctgtcacgcacatcagggttttgtgcGCAGCCTCGTTGTTCGTCGCAGGCTgcgc                                                                                                                                         >  4:163264‑M1/77‑105 (MQ=255)                                                   gATGGGGCTGCAGGAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGt                                                                                      >  2:54037/1‑149 (MQ=255)                                                       gggCTGCAGGAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAAccc                                                                                                                                <  6:96305/103‑1 (MQ=255)                                                         gCTGCAGGAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGACTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTAAACCGCTGGCACTACCGTGAAAAg                                                                                >  1:189538/1‑149 (MQ=255)                                                             cAGGAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGcc                                                                              <  1:54037/147‑1 (MQ=255)                                                                gAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGc                                                                                              <  7:266691/128‑1 (MQ=255)                                                                gAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGc                                                                                              >  8:266691/1‑128 (MQ=255)                                                                    gtgtCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCt                                                                      >  6:273979/1‑148 (MQ=255)                                                                         gcgTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCt                                                                 <  5:273979/148‑1 (MQ=255)                                                                            ccagcggtataatcgtggctgtcacgcacatcagggttttgtgcgccgcctgcgacgcacaacgcggctgcGCCCAAAACCCGGATGTGCGTGGCAGCCACGATTATACCGCTGGCACGAACGTGAAAAGCCCACCCGCTTATCTGGGc                                                             >  4:271819‑M2/72‑149 (MQ=255)                                                                              aaaaaCTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTg                                                           >  1:10451/1‑149 (MQ=255)                                                                                   cTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTc                                                       >  5:159876/1‑148 (MQ=255)                                                                                    tCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGACCACCCGCTTATCTGGGCTGCGTCa                                                      >  4:125992/1‑148 (MQ=255)                                                                                      aaGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAg                                                   >  2:10907/1‑149 (MQ=255)                                                                                        gATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGc                                                 >  8:269915/1‑149 (MQ=255)                                                                                            gCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAg                                              <  7:214368/148‑1 (MQ=255)                                                                                                gCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCt                                                                 <  1:194859/125‑1 (MQ=255)                                                                                                gCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCt                                                                 >  2:194859/1‑125 (MQ=255)                                                                                                    gTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCAACCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAgg                                      >  6:149021/1‑148 (MQ=255)                                                                                                      gCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGaa                                   >  5:222452/1‑149 (MQ=255)                                                                                                          tACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAAtgtg                               <  6:159876/149‑1 (MQ=255)                                                                                                            cTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGa                              >  1:25275/1‑148 (MQ=255)                                                                                                               gTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAAc                          >  1:311283/1‑149 (MQ=255)                                                                                                               gTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAAc                          <  4:263196/149‑1 (MQ=255)                                                                                                                  aTCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAACCTa                       >  5:224108/1‑149 (MQ=255)                                                                                                                  aTCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAACCTa                       >  4:274149/1‑149 (MQ=255)                                                                                                                   tCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAACCTAt                      <  7:269915/149‑1 (MQ=255)                                                                                                                   tCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAACCTAt                      <  6:224108/149‑1 (MQ=255)                                                                                                                    cGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAACCTAt                      >  8:93148/1‑148 (MQ=255)                                                                                                                      gcgcagcctgcgacgaacaacgaggctgcGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTgg                                                               >  4:163264‑M2/30‑105 (MQ=255)                                                                                                                      gcgcagcctgcgacgaacaacgaggctgcGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTgg                                                               <  3:163264‑M2/76‑1 (MQ=255)                                                                                                                                gttgttCGTCGCAGGCTGCGCACAAAACCATGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAACCTATGAAGTCGAggg           <  5:149021/147‑1 (MQ=255)                                                                                                                                 ttgttCTTCGCAGGCTGCGTACAATACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAATGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAACCTATGAAGTCGAGGGTGa        <  6:222452/149‑1 (MQ=255)                                                                                                                                    ttCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAACCTATGAAGTCGAGGGTGATaa     >  4:9741/1‑149 (MQ=255)                                                                                                                                       gtcgCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAACCTATGAAGTCGAGGGTGATAAcgc  >  6:23512/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                         GACAAAAACCAAAAAAGGGGCAGGCTGCTTGGCAACATTTCCCAGTTTTCGATGGGGCTGCAGGAGCGTGTCGCGTGAAAAACTCAAGATCGCTGGCAGGTGCAATACTGGTAATCGGGGCAGCCTCGTTGTTCGTCGCAGGCTGCGCACAAAACCCTGATGTGCGTGACAGCCACGATTATACCGCTGGCACTACCGTGAAAAGCCCACCCGCTTATCTGGGCTGCGTCAAAGGCGAGCTACAAGGGAATGTGAAAACCTATGAAGTCGAGGGTGATAACGC  >  NC_002947/3402034‑3402316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.