New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4875844 =	30 (0.610)	3 (0.060)	3/240	NT	7.9%	coding (1032/1350 nt)	PP_4284	transporter
	?	NC_002947	4875913 =	42 (0.910)					coding (1101/1350 nt)	PP_4284	transporter

CCGGTGACCAGCTATGTGGAGAGTGCTGCGGGGGTTGCCGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGTTCTCGGTCGCCGATGGTATTGCCCTGGGCTTCAT  >  NC_002947/4875767‑4876059                                                                                                                                                   |                                                                                                                                                   ccgGTGACCAGCTATGTGGAGAGTGCTGCGGGGGTTGCCGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGt                                                                                                                                                    <  7:12421/147‑1 (MQ=255) ccgGTGACCAGCTATGTGGAGAGTGCTGCGGGGGTTGCCGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGt                                                                                                                                                    >  8:12421/1‑147 (MQ=255)       aCCAGCTATGTGGAGAGTGCTGCGGGGGTTGCCGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGAt                                                                                                                                            >  7:223720/1‑149 (MQ=255)         cAGCTATGTGGAGAGTGCTGCGGGGGTTGCCGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGAt                                                                                                                                            <  4:86069/147‑1 (MQ=255)         cAGCTATGTGGAGAGTGCTGCGGGGGTTGCCGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATca                                                                                                                                          >  3:86069/1‑148 (MQ=255)                 tgGAGAGTGCTGCGGGGGTTGCCGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGc                                                                                                                                   >  1:111134/1‑148 (MQ=255)                  ggAGAGTGCTGCGGGGGTTGCCGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGa                                                                                                                                             >  7:36541/1‑137 (MQ=255)                  ggAGAGTGCTGCGGGGGTTGCCGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGa                                                                                                                                             <  8:36541/137‑1 (MQ=255)                        caatggatgtgcgccatgctgcccatcatcagcatcgcaacgtagatcagtgcaCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGt                                                                                                                                                    >  7:19684‑M1/55‑124 (MQ=255)                        caatggatgtgcgccatgctgcccatcatcagcatcgcaacgtagatcagtgcaCCTGCTGTTCATCGCCGCGAAGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGt                                                                                                                                                    <  8:19684‑M1/70‑1 (MQ=255)                              gggggTTGCCGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATgg                                                                                                                     <  3:70901/149‑1 (MQ=255)                                      ccGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCt                                                                                                                             >  2:3812/1‑133 (MQ=255)                                      ccGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCt                                                                                                                             <  1:3812/133‑1 (MQ=255)                                      ccGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATg                                                                                                             <  2:173868/149‑1 (MQ=255)                                                   aaCTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCAtt                                                                                                <  7:153576/149‑1 (MQ=255)                                                        gCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATgg                                                                                                                     >  6:258078/1‑123 (MQ=255)                                                        gCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATgg                                                                                                                     <  5:258078/123‑1 (MQ=255)                                                            gACGGCTGTGGTGGTAGACCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAgg                                                                                       >  3:246256/1‑149 (MQ=255)                                                             aCGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAg                                                                                        <  2:118011/147‑1 (MQ=255)                                                                         gtAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCtga                                                                                                                           <  8:54642/100‑1 (MQ=255)                                                                         gtAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCtga                                                                                                                           >  7:54642/1‑100 (MQ=255)                                                                             acctgctgtcgcataggccggaatcatcccggccagcggcgcgaagaacttcgcggcgatgaacagcaggTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTg                                                                                               <  8:19684‑M2/54‑1 (MQ=255)                                                                             acctgctgtcgcataggccggaatcatcccggccagcggcgcgaagaacatcgcggcgatgaacagcaggTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTg                                                                                               >  7:19684‑M2/71‑124 (MQ=255)                                                                               ctgctgtcgcataggccggaatcatcccggccagcggcgcgaagaacatcgcggcgatgaacagcaggTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGc                                                                    >  4:69997‑M2/69‑149 (MQ=255)                                                                                     TTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGa                                                                                            <  8:243856‑M1/119‑1 (MQ=255)                                                                                     TTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGa                                                                                            >  7:243856‑M1/1‑119 (MQ=255)                                                                                     TTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGt                                                              <  2:278506‑M1/149‑1 (MQ=255)                                                                                         tCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTcaca                                                          <  1:278506/149‑1 (MQ=255)                                                                                         tCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTca                                                            >  1:19224/1‑147 (MQ=255)                                                                                            ccgcGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTg                                                       <  4:246256/149‑1 (MQ=255)                                                                                                   gTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCatga                                                >  3:261481/1‑149 (MQ=255)                                                                                                   gTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCatga                                                >  2:180402/1‑149 (MQ=255)                                                                                                      cttcGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTg                                                                                                                                    >  6:183223/1‑62 (MQ=255)                                                                                                      cttcGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTg                                                                                                                                    <  5:183223/62‑1 (MQ=255)                                                                                                      cttcGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGc                                             >  5:32866/1‑149 (MQ=255)                                                                                                       ttcGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGcc                                            >  7:279397/1‑149 (MQ=255)                                                                                                       ttcGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGcc                                            >  6:280609/1‑149 (MQ=255)                                                                                                       ttcGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGcc                                            >  7:63321/1‑149 (MQ=255)                                                                                                          gcgcCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGc                                          <  6:32866/148‑1 (MQ=255)                                                                                                               gcgtgCCGGGATGATTCCGGCCTATGCTACAGCAGGTTCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGt                                    <  8:223720/145‑1 (MQ=255)                                                                                                               ataggCCGGAATCATCCCGGCCTATGCGACAGCAGGTCCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGt                                    >  1:57340/4‑149 (MQ=255)                                                                                                                   gCCGGGATGAGTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCCGCATGGCGCACATCCAGTGCGATGAGGCGCCCGAGAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGGtctc                                >  8:257960/1‑149 (MQ=255)                                                                                                                      gggATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGTTCTCgg                              >  5:173764/1‑148 (MQ=255)                                                                                                                       ggATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGTTCTCGGTc                            <  8:279397/149‑1 (MQ=255)                                                                                                                          tgatTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGCTCTCGGTCGc                          >  4:151163/1‑148 (MQ=255)                                                                                                                          tgatTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGCTCTCGGTCGc                          <  3:151163/148‑1 (MQ=255)                                                                                                                             ttCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGTTCTCgg                              >  4:83981/1‑141 (MQ=255)                                                                                                                             ttCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGTTCTCgg                              <  3:83981/141‑1 (MQ=255)                                                                                                                               ccGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGTTCTCGGTCGCCGATg                     <  1:180402/148‑1 (MQ=255)                                                                                                                               ccGGCCTAAGCGACAGCAGGTGCACTGATCTACGATGCCATGCTGATGATGGCCAGCAAGGCGCACATCCATTGGGATGAGGCCACCGACACCATTCCGGCCATCGTCACAGTGATCATGATGCCGCTGACGTTCTCCGTCGCCGATgg                    >  6:157278/1‑149 (MQ=255)                                                                                                                                 ggCCTATGCGACAGCTGGTGCAGTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCTCATCCATTGGGATGAGGCGAGCGACAGCTTTCCGGGGATCGTGACAGTGATCTTGATGCGGCTGACGTTCTCGGTCGCGGATGGtt                  <  5:157278/149‑2 (MQ=255)                                                                                                                                 ggCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGTTCTCGGTCGCCGATGGTa                  <  5:280609/149‑1 (MQ=255)                                                                                                                                         cGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGTTCATGATGCCGCTGACGTTCTCGGTCGCCGATGGTATTGACCTg          >  6:186640/1‑149 (MQ=255)                                                                                                                                         cGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGTTCTCGGTCGCCGATGGTATTGCCCTg          <  2:57340/149‑1 (MQ=255)                                                                                                                                                  gTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGTTCTCGGTCGCAGATGGTATTGCCCTGGGCTtcat  >  8:282259‑M2/2‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CCGGTGACCAGCTATGTGGAGAGTGCTGCGGGGGTTGCCGCAGGTGGCCGAACTGGCCTGACGGCTGTGGTGGTAGGCCTGCTGTTCATCGCCGCGATGTTCTTCGCGCCGCTGGCCGGGATGATTCCGGCCTATGCGACAGCAGGTGCACTGATCTACGTTGCGATGCTGATGATGGGCAGCATGGCGCACATCCATTGGGATGAGGCCACCGACAGCATTCCGGCGATCGTCACAGTGATCATGATGCCGCTGACGTTCTCGGTCGCCGATGGTATTGCCCTGGGCTTCAT  >  NC_002947/4875767‑4876059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.