New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 136826	65 (1.290)	5 (0.100)	4/248	NT	7.0%	coding (711/789 nt)	amiD	1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase
	?	NC_002947	= 136859	70 (1.450)					coding (744/789 nt)	amiD	1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase

CCGCCAAGCGTTGGCTGGTACCAGCAGGAGCTGGCACGGTTTGGCTATCAGATCGAGCAGACCGGCGTGCTGGATGTCGCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/136713‑136826 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcATCCGGCATACCGTCGAAGCGCTGCGGGCGGAAGCGCATCTGGAAGGCGGCGACCACATGACGTGTGGCGACATCCAGCACGCCGGTCTGCTCGATCTGATAGCCAAACCGTGCCAGCTCCTGCTGGTACCAGCCAACGCTTGGCGGG  <  NC_002947/136859‑136712                                                                                                                                                                                                                                                                        CCGCCAAGCGTTGGCTGGTACCAGCAGGAGCTGGCACGGTTTGGCTATCAGATCGAGCAGACCGGCGTGCTGGATGTCGCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGCATCCGGCATACCGTCGAAGCGCTGCGGGCGGAAGC                                                                                                                   >  1:315941/1‑149    CCAAGCGTTGGCTGGTACCAGCAGGAGCTGGCACGGTTTGGCTATCAGATCGAGCAGACCGGCGTGCTGGATGTCGCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGCATCCGGCATACCGTCGAAGCGCTGCGGGCGGAAGCGCA                                                                                                                <  2:315941/149‑1    CCAAGCGTTGGCTGGTACCAGCAGGAGCTGGCACGGTTTGGCTATCAGATCGAGCAGACCGGCGTGCTGGATGTCGCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGCATCCGGCATACCGTCGAAGCGCTGCGGGCGGAAGCGCA                                                                                                                <  8:17543/149‑1     CAAGCGTTGGCTGGTACCAGCAGGAGCTGGCACGGTTTGGCTATCAGATCGAGCAGACCGGCGTGCTGGATGTCGCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGCATCCGGCATACCGTCGAAGCGCTGCGGGCGGAAGCGCAT                                                                                                               <  3:165451/149‑1          GTTGGCTGGTACCAGCAGGAGCTGGCACGGTTTGGCTATCAGATCGAGCAGACCGGCGTGCTGGATGTCGCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGCATCCGGCATACCGTCGAAGCGCTGCGGGCGGAAGCGCATCTGGA                                                                                                          <  6:205707/149‑1                                                                                                               GCGCATCCGGCATACCGTCGAAGCGCTGCGGGCGGAAGCGCATCTGGAAGGCGGCGACCACATGACGTGTGGCGACATCCAGCACGCCGGT                                                               <  1:190161/91‑1                                                                                                               GCGCATCCGGCATACCGTCGAAGCGCTGCGGGCGGAAGCGCATCTGGAAGGCGGCGACCACATGACGTGTGGCGACATCCAGCACGCCGGT                                                               >  2:190161/1‑91                                                                                                                  CATCCGGCATACCGTCGAAGCGCTGCGGGCGGAAGCGCATCTGGAAGGCGGCGACCACATGACGTGTGGCGACATCCAGCACGCCGGTCTGCTCGATCTGATAGCCAAACCGTGCCAGCTCCTGCTGGTACCAGCCAACGCTTGGCGGG  <  7:33263/149‑1                                                                                                                                                                                                                                                                        CCGCCAAGCGTTGGCTGGTACCAGCAGGAGCTGGCACGGTTTGGCTATCAGATCGAGCAGACCGGCGTGCTGGATGTCGCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/136713‑136826 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcATCCGGCATACCGTCGAAGCGCTGCGGGCGGAAGCGCATCTGGAAGGCGGCGACCACATGACGTGTGGCGACATCCAGCACGCCGGTCTGCTCGATCTGATAGCCAAACCGTGCCAGCTCCTGCTGGTACCAGCCAACGCTTGGCGGG  <  NC_002947/136859‑136712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.