New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 250473 | 60 (1.190) | 4 (0.080) | 4/246 | NT | 7.1% | coding (730/1347 nt) | nfeD | membrane bound peptidase NefD |
? | NC_002947 | = 250522 | 48 (1.000) | coding (681/1347 nt) | nfeD | membrane bound peptidase NefD |
CGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCAGCGCTACGCTGGGGTTGGTGATGACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/250321‑250473 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccgcAGGCGCCAGCGTGGTCGAGCATCTGCCGGACTGGCGCACACGGTTTCTGGCGGTCATCA < NC_002947/250522‑250464 CGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCAGCGCTACGCTGGGGTTGGTGATGA > 2:137481/1‑149 AACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCAGCGCTACGCTGGGGTTGGTGATGACCGC < 6:251580/149‑1 GCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCAGCGCTACGCTGGGGTTGGTGATGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCCGGACT > 8:45439/1‑149 ACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCAGCGCTACGCTGGGGTTGGTGATGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCCGGACTGGCGCACACGGTT > 2:22748/1‑149 CCGCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCAGCGCTACGCTGGGGTTGGTGATGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCCGGACTGGCGCACACGGTTTCTGGCGGTCATC < 7:45439/149‑1 CGCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCAGCGCTACGCTGGGGTTGGTGATGACCGCAGGCGCCAGCGTGGTCGAGCATCTGCCGGACTGGCGCACACGGTTTCTGGCGGTCATCA < 1:22748/149‑1 CGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCAGCGCTACGCTGGGGTTGGTGATGACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/250321‑250473 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccgcAGGCGCCAGCGTGGTCGAGCATCTGCCGGACTGGCGCACACGGTTTCTGGCGGTCATCA < NC_002947/250522‑250464 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |