New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 250473	60 (1.190)	4 (0.080)	4/246	NT	7.1%	coding (730/1347 nt)	nfeD	membrane bound peptidase NefD
	?	NC_002947	= 250522	48 (1.000)					coding (681/1347 nt)	nfeD	membrane bound peptidase NefD

CACCGCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAGGCGCAAGGCCTCGCTGGCGGACAGG  >  NC_002947/250381‑250651                                                                                                                                               |                                                                                                                                  cACCGCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCt                                                                                                                            <  5:209770/149‑1 (MQ=255) cACCGCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCt                                                                                                                            <  7:145804/149‑1 (MQ=255)     gCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCaa                                                                                                                        <  2:114033/149‑1 (MQ=255)     gCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCaa                                                                                                                        >  7:298922/1‑149 (MQ=255)      cAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAAc                                                                                                                       >  7:23421/1‑149 (MQ=255)          aCCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGcc                                                                                                                   <  7:181033/149‑1 (MQ=255)          aCCTGGGTTCATGAATTCGAACAACAGGCCGT‑AACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCg                                                                                                                  <  8:288528/149‑1 (MQ=255)            cTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGt                                                                                                                 <  2:299867/149‑1 (MQ=255)               ggTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTgg                                                                                                               <  3:51740/148‑1 (MQ=255)                gTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGtt                                                                                                             <  6:242294/149‑1 (MQ=255)                       aaTTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTggccggc                                                                                                      >  3:310703/1‑149 (MQ=255)                            gAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCt                                                                                                 >  1:133215/1‑149 (MQ=255)                            gAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCt                                                                                                 <  2:133215/149‑1 (MQ=255)                                aacaGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTggcc                                                                                                         <  5:33988/137‑1 (MQ=255)                                aacaGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTggcc                                                                                                         >  6:33988/1‑137 (MQ=255)                                     tccGTAATCGCCGTTCATGTTCTGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCTTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGtt                                                                                         <  8:256831/147‑1 (MQ=255)                                     gCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGttt                                                                                        >  8:12023/1‑149 (MQ=255)                                     gCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGttt                                                                                        >  5:237075/1‑149 (MQ=255)                                      ccGTAAACGCCGATCATGATCAGGATCATGCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGttt                                                                                        >  1:182278/1‑149 (MQ=255)                                        gTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGc                                                                                     <  8:23421/149‑1 (MQ=255)                                         tAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGcc                                                                                    <  1:137481/149‑1 (MQ=255)                                           aaCGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGt                                                                                  >  8:105462/1‑149 (MQ=255)                                               ccGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAg                                                                              <  7:205119/149‑1 (MQ=255)                                                  aTCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCtt                                                                           <  8:298922/149‑1 (MQ=255)                                                    cATGATCAGGATGA‑GGGGTACGCTGGGGTTGGTGATGACCGCCAGAATCCGTGTGCGCCAGTCCGGCAGATGCTCGAGCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTTGCCGTCCACCTGAAGCGTTTTGCCGTCGAGCTTg                                                                          <  6:237075/148‑1 (MQ=255)                                                       gatcaggatca‑gCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCAGGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGGAGCGTTTTGCCGTCGAGCTTgcg                                                                        >  1:102391/1‑147 (MQ=255)                                                        atcaggatca‑gCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCgcag                                                                     >  6:50425/1‑149 (MQ=255)                                                         tcaggatca‑gCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGGAGCGTTTTGCCGTCGAGCTTGCgcagc                                                                    <  2:102391/149‑1 (MQ=255)                                                             gatca‑gCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGt                                                                >  3:30604/1‑149 (MQ=255)                                                                 a‑gCCCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTcag                                                             <  4:311415/148‑1 (MQ=255)                                                                   gcgcTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTcaggc                                                           <  5:210002/149‑1 (MQ=255)                                                                   gcgcTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTcaggc                                                           <  5:50425/149‑1 (MQ=255)                                                                    cgcTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTcaggca                                                          <  7:105462/149‑1 (MQ=255)                                                                    cgcTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTCCCGTGGTTGGCCGGCCACCTCAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTcagg                                                            >  7:266085/1‑147 (MQ=255)                                                                     gcTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTcaggcag                                                         <  8:216041/149‑1 (MQ=255)                                                                     gcTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTcaggcag                                                         <  7:12023/149‑1 (MQ=255)                                                                          gCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCAt                                                    <  2:208634/149‑1 (MQ=255)                                                                              gggTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGc                                                >  6:24798/1‑149 (MQ=255)                                                                               ggTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGcc                                               <  4:310703/149‑1 (MQ=255)                                                                                     tgatgaCCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTgcggtcatcaccaaccccagcgtagcgctgatcctgatcatgatcggcgtttacggcctgttgttcgaattcatgaacccaggttctgcg                                         <  1:22748‑M2/149‑91 (MQ=255)                                                                                      gatgaCCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTgcggtcatcaccaaccccagcgtagcgctgatcctgatcatgatcggcgtttacggcctgttgttcgaattcatgaacccaggttctgcgg                                        <  7:45439‑M2/149‑92 (MQ=255)                                                                                          aCCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTgatcgat                                    <  2:182278/149‑1 (MQ=255)                                                                                          aCCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTgatcga                                     <  4:30604/148‑1 (MQ=255)                                                                                           ccGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGc                                                                             <  1:294311/107‑1 (MQ=255)                                                                                           ccGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGc                                                                             >  2:294311/1‑107 (MQ=255)                                                                                                   aaCCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTgcggtcatcaccaaccccagcgtagcgctgatcctgatcatgatcggcgtttacggcctgttgttcgaattcatgaacccaggttctgcggtgggcggtgtggt                           >  2:22748‑M2/1‑45 (MQ=255)                                                                                                          tgCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAg                           >  8:69260/1‑142 (MQ=255)                                                                                                          tgCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAg                           <  7:69260/142‑1 (MQ=255)                                                                                                          tgCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAGGCGCAAg                    >  1:262543/1‑149 (MQ=255)                                                                                                                aGTCCGGCAGATGCTCGACCACGCTGGCGCCTgcggtcatcaccaaccccagcgtagcgctgatcctgatcatgatcggcgtttacggcctgttgttcgaattcatgaacccaggttctgcggtgggcggtgtggtcggtggtatctgc              >  8:45439‑M2/1‑32 (MQ=255)                                                                                                                  tCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAGGCGCAAGGCCTCGCt            >  4:219602/1‑149 (MQ=255)                                                                                                                           tGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTgat                                        >  3:10506/1‑112 (MQ=255)                                                                                                                           tGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTgat                                        <  4:10506/112‑1 (MQ=255)                                                                                                                             cTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAGGCGCAAGGCCTCGCTGGCGGACAgg  <  2:262543/148‑1 (MQ=255)                                                                                                                               cGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAGGCGCAAg                    <  4:27930/128‑1 (MQ=255)                                                                                                                               cGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAGGCGCAAg                    >  3:27930/1‑128 (MQ=255)                                                                                                                                               |                                                                                                                                  CACCGCAGAACCTGGGTTCATGAATTCGAACAACAGGCCGTAAACGCCGATCATGATCAGGATCA‑GCGCTACGCTGGGGTTGGTGATGACCGCCAGAAACCGTGTGCGCCAGTCCGGCAGATGCTCGACCACGCTGGCGCCTGCGGTCTGCAACTGCCGTGGTTGGCCGGCCACCTGAAGCGTTTTGCCGTCGAGCTTGCGCAGCAGGTCAGGCAGGTCATCGGCCACCTGATCGATCACGTTCAGGCGCAAGGCCTCGCTGGCGGACAGG  >  NC_002947/250381‑250651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.